miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2737 5' -57.4 NC_001491.2 + 117782 0.82 0.122736
Target:  5'- -cGCCCGCUCCCAGCCGCccgggaggaGGCCUc -3'
miRNA:   3'- gaCGGGUGAGGGUCGGUGaua------UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 115989 0.78 0.238699
Target:  5'- -cGCCCGCUCCCgggggcagcagcaccAGCCGCagaaGGCCCg -3'
miRNA:   3'- gaCGGGUGAGGG---------------UCGGUGaua-UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 114448 0.77 0.266493
Target:  5'- gCUGCCCaucaccgagGCUCCCcGCCGCcg-AGCCCc -3'
miRNA:   3'- -GACGGG---------UGAGGGuCGGUGauaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 15168 0.77 0.272871
Target:  5'- -cGCCCACUCCCA-CCACUAc-GUCCu -3'
miRNA:   3'- gaCGGGUGAGGGUcGGUGAUauCGGG- -5'
2737 5' -57.4 NC_001491.2 + 140340 0.73 0.453284
Target:  5'- -cGCCCGauCUCCCGGCCACUGaa--CCa -3'
miRNA:   3'- gaCGGGU--GAGGGUCGGUGAUaucgGG- -5'
2737 5' -57.4 NC_001491.2 + 25676 0.72 0.51002
Target:  5'- aUGCUCACUCCCAucGCCcCU--AGCCUc -3'
miRNA:   3'- gACGGGUGAGGGU--CGGuGAuaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 146213 0.71 0.548445
Target:  5'- -gGCCCAgagcgcgUUCCCGGCCGCcAUGGCg- -3'
miRNA:   3'- gaCGGGU-------GAGGGUCGGUGaUAUCGgg -5'
2737 5' -57.4 NC_001491.2 + 40092 0.71 0.579618
Target:  5'- aCUGCCCGCUgCgCAGUCGCg--AGUCUu -3'
miRNA:   3'- -GACGGGUGAgG-GUCGGUGauaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 115923 0.7 0.599932
Target:  5'- -gGCCCAC-CUCAGCCAggAggcgauGCCCg -3'
miRNA:   3'- gaCGGGUGaGGGUCGGUgaUau----CGGG- -5'
2737 5' -57.4 NC_001491.2 + 1787 0.7 0.610128
Target:  5'- -cGUCCACgCCCgcGGCCGCUcu-GCCCc -3'
miRNA:   3'- gaCGGGUGaGGG--UCGGUGAuauCGGG- -5'
2737 5' -57.4 NC_001491.2 + 73992 0.7 0.620341
Target:  5'- -aGCCCucGCUCCCGccgcgccgccGCCGCagcAGCCCu -3'
miRNA:   3'- gaCGGG--UGAGGGU----------CGGUGauaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 74056 0.7 0.620341
Target:  5'- -aGCCCucGCUCCCGccgcgccgccGCCGCagcAGCCCu -3'
miRNA:   3'- gaCGGG--UGAGGGU----------CGGUGauaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 74248 0.7 0.620341
Target:  5'- -aGCCCucGCUCCCGccgcgccgccGCCGCagcAGCCCu -3'
miRNA:   3'- gaCGGG--UGAGGGU----------CGGUGauaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 74120 0.7 0.620341
Target:  5'- -aGCCCucGCUCCCGccgcgccgccGCCGCagcAGCCCu -3'
miRNA:   3'- gaCGGG--UGAGGGU----------CGGUGauaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 74184 0.7 0.620341
Target:  5'- -aGCCCucGCUCCCGccgcgccgccGCCGCagcAGCCCu -3'
miRNA:   3'- gaCGGG--UGAGGGU----------CGGUGauaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 115621 0.7 0.640786
Target:  5'- aCUGCCaCACUCCgCGGCCcagcgacgcgGCUugcgcGGCCUa -3'
miRNA:   3'- -GACGG-GUGAGG-GUCGG----------UGAua---UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 116173 0.69 0.660183
Target:  5'- -aGCCCuucuccgGCUCCgCGGCCGCggaggggAGCCUu -3'
miRNA:   3'- gaCGGG-------UGAGG-GUCGGUGaua----UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 119743 0.69 0.671381
Target:  5'- -aGCCCACUCCCucGGCUcCUcccaAGCUCg -3'
miRNA:   3'- gaCGGGUGAGGG--UCGGuGAua--UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 81276 0.69 0.681526
Target:  5'- gCUGCCCAaagauuggCCUugGGCC-CUGgGGCCCa -3'
miRNA:   3'- -GACGGGUga------GGG--UCGGuGAUaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 50580 0.69 0.681526
Target:  5'- -cGCCCACaaCCCAGCaCAUacacGCCCa -3'
miRNA:   3'- gaCGGGUGa-GGGUCG-GUGauauCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.