miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2737 5' -57.4 NC_001491.2 + 141859 0.67 0.788463
Target:  5'- -gGCCCAg-CCCAGCUccgGCgaccccGGCCCa -3'
miRNA:   3'- gaCGGGUgaGGGUCGG---UGaua---UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 70381 0.67 0.788463
Target:  5'- -gGUCUugUCCCAcGCUguagGCUGUcGCCCc -3'
miRNA:   3'- gaCGGGugAGGGU-CGG----UGAUAuCGGG- -5'
2737 5' -57.4 NC_001491.2 + 147059 0.67 0.779263
Target:  5'- -gGCuCCcCUCCgCGGCCGCgg-AGCCg -3'
miRNA:   3'- gaCG-GGuGAGG-GUCGGUGauaUCGGg -5'
2737 5' -57.4 NC_001491.2 + 22893 0.67 0.779263
Target:  5'- gUGCUaGCU-CCAGCCAgaGUAcGCCCg -3'
miRNA:   3'- gACGGgUGAgGGUCGGUgaUAU-CGGG- -5'
2737 5' -57.4 NC_001491.2 + 49642 0.67 0.76993
Target:  5'- cCUGCCCGCUCCaugucuGCCGUggggcacAGCCUg -3'
miRNA:   3'- -GACGGGUGAGGgu----CGGUGaua----UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 111678 0.67 0.768991
Target:  5'- aCUGCCgggGCUCCCcgacugcAGCCACUGguggacUGGCUg -3'
miRNA:   3'- -GACGGg--UGAGGG-------UCGGUGAU------AUCGGg -5'
2737 5' -57.4 NC_001491.2 + 33625 0.67 0.760476
Target:  5'- gCUGCgUAggCCCGGCaggcuagaaACUGUAGCCUg -3'
miRNA:   3'- -GACGgGUgaGGGUCGg--------UGAUAUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 114923 0.68 0.741235
Target:  5'- -aGCgCCAC-CUCAGCCGCgc-GGUCCu -3'
miRNA:   3'- gaCG-GGUGaGGGUCGGUGauaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 50840 0.68 0.738315
Target:  5'- -cGCCCcgagugcugacacgGCUCCUacGGCCAUUuucgcGGCCCg -3'
miRNA:   3'- gaCGGG--------------UGAGGG--UCGGUGAua---UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 574 0.68 0.735386
Target:  5'- -aGCCCcagcauagcagugaGC-CCCAGCauagcagugagcccCACUGUAGCCUg -3'
miRNA:   3'- gaCGGG--------------UGaGGGUCG--------------GUGAUAUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 61370 0.68 0.731468
Target:  5'- --uUCCACg-CCAGCCGCUgcGUGGCCg -3'
miRNA:   3'- gacGGGUGagGGUCGGUGA--UAUCGGg -5'
2737 5' -57.4 NC_001491.2 + 113087 0.68 0.731468
Target:  5'- --uUCCGCUUCCGGCCAC----GCCCc -3'
miRNA:   3'- gacGGGUGAGGGUCGGUGauauCGGG- -5'
2737 5' -57.4 NC_001491.2 + 118346 0.68 0.721615
Target:  5'- cCU-CCUAC-CCCGGCgGCUGccGCCCa -3'
miRNA:   3'- -GAcGGGUGaGGGUCGgUGAUauCGGG- -5'
2737 5' -57.4 NC_001491.2 + 85694 0.68 0.711685
Target:  5'- gUGUCUcCU-CCGGCCACggcggcGUGGCCCa -3'
miRNA:   3'- gACGGGuGAgGGUCGGUGa-----UAUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 105462 0.68 0.701687
Target:  5'- -aGCaCCugUCCCGGCCuACgc-AGaCCCa -3'
miRNA:   3'- gaCG-GGugAGGGUCGG-UGauaUC-GGG- -5'
2737 5' -57.4 NC_001491.2 + 81276 0.69 0.681526
Target:  5'- gCUGCCCAaagauuggCCUugGGCC-CUGgGGCCCa -3'
miRNA:   3'- -GACGGGUga------GGG--UCGGuGAUaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 50580 0.69 0.681526
Target:  5'- -cGCCCACaaCCCAGCaCAUacacGCCCa -3'
miRNA:   3'- gaCGGGUGa-GGGUCG-GUGauauCGGG- -5'
2737 5' -57.4 NC_001491.2 + 119743 0.69 0.671381
Target:  5'- -aGCCCACUCCCucGGCUcCUcccaAGCUCg -3'
miRNA:   3'- gaCGGGUGAGGG--UCGGuGAua--UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 116173 0.69 0.660183
Target:  5'- -aGCCCuucuccgGCUCCgCGGCCGCggaggggAGCCUu -3'
miRNA:   3'- gaCGGG-------UGAGG-GUCGGUGaua----UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 115621 0.7 0.640786
Target:  5'- aCUGCCaCACUCCgCGGCCcagcgacgcgGCUugcgcGGCCUa -3'
miRNA:   3'- -GACGG-GUGAGG-GUCGG----------UGAua---UCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.