miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2737 5' -57.4 NC_001491.2 + 574 0.68 0.735386
Target:  5'- -aGCCCcagcauagcagugaGC-CCCAGCauagcagugagcccCACUGUAGCCUg -3'
miRNA:   3'- gaCGGG--------------UGaGGGUCG--------------GUGAUAUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 1262 0.67 0.806434
Target:  5'- -gGCUCuCUCUCGGgCGCg--GGCCCg -3'
miRNA:   3'- gaCGGGuGAGGGUCgGUGauaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 1787 0.7 0.610128
Target:  5'- -cGUCCACgCCCgcGGCCGCUcu-GCCCc -3'
miRNA:   3'- gaCGGGUGaGGG--UCGGUGAuauCGGG- -5'
2737 5' -57.4 NC_001491.2 + 3232 0.67 0.797523
Target:  5'- -cGCCCGCuUCCUAGC-GCguacGCCCu -3'
miRNA:   3'- gaCGGGUG-AGGGUCGgUGauauCGGG- -5'
2737 5' -57.4 NC_001491.2 + 9170 0.66 0.856312
Target:  5'- uUGCCgGCgUCUauaggCAGCCAgUAU-GCCCa -3'
miRNA:   3'- gACGGgUG-AGG-----GUCGGUgAUAuCGGG- -5'
2737 5' -57.4 NC_001491.2 + 15168 0.77 0.272871
Target:  5'- -cGCCCACUCCCA-CCACUAc-GUCCu -3'
miRNA:   3'- gaCGGGUGAGGGUcGGUGAUauCGGG- -5'
2737 5' -57.4 NC_001491.2 + 22893 0.67 0.779263
Target:  5'- gUGCUaGCU-CCAGCCAgaGUAcGCCCg -3'
miRNA:   3'- gACGGgUGAgGGUCGGUgaUAU-CGGG- -5'
2737 5' -57.4 NC_001491.2 + 25676 0.72 0.51002
Target:  5'- aUGCUCACUCCCAucGCCcCU--AGCCUc -3'
miRNA:   3'- gACGGGUGAGGGU--CGGuGAuaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 33625 0.67 0.760476
Target:  5'- gCUGCgUAggCCCGGCaggcuagaaACUGUAGCCUg -3'
miRNA:   3'- -GACGgGUgaGGGUCGg--------UGAUAUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 39157 0.66 0.832189
Target:  5'- gCUGCCCACgccCCCAGagCAUUauccGUGGUCa -3'
miRNA:   3'- -GACGGGUGa--GGGUCg-GUGA----UAUCGGg -5'
2737 5' -57.4 NC_001491.2 + 40092 0.71 0.579618
Target:  5'- aCUGCCCGCUgCgCAGUCGCg--AGUCUu -3'
miRNA:   3'- -GACGGGUGAgG-GUCGGUGauaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 41238 0.67 0.806434
Target:  5'- -gGCCuCGCUCCgAGCgGCUucGGCUUg -3'
miRNA:   3'- gaCGG-GUGAGGgUCGgUGAuaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 41646 0.66 0.856312
Target:  5'- aUGCCUcgUCCCAGCUAacuuCUGUcGCCg -3'
miRNA:   3'- gACGGGugAGGGUCGGU----GAUAuCGGg -5'
2737 5' -57.4 NC_001491.2 + 49642 0.67 0.76993
Target:  5'- cCUGCCCGCUCCaugucuGCCGUggggcacAGCCUg -3'
miRNA:   3'- -GACGGGUGAGGgu----CGGUGaua----UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 50580 0.69 0.681526
Target:  5'- -cGCCCACaaCCCAGCaCAUacacGCCCa -3'
miRNA:   3'- gaCGGGUGa-GGGUCG-GUGauauCGGG- -5'
2737 5' -57.4 NC_001491.2 + 50840 0.68 0.738315
Target:  5'- -cGCCCcgagugcugacacgGCUCCUacGGCCAUUuucgcGGCCCg -3'
miRNA:   3'- gaCGGG--------------UGAGGG--UCGGUGAua---UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 57959 0.66 0.823775
Target:  5'- gCUGgCCAUg-CCGGCCACccUGGCUCu -3'
miRNA:   3'- -GACgGGUGagGGUCGGUGauAUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 61370 0.68 0.731468
Target:  5'- --uUCCACg-CCAGCCGCUgcGUGGCCg -3'
miRNA:   3'- gacGGGUGagGGUCGGUGA--UAUCGGg -5'
2737 5' -57.4 NC_001491.2 + 70381 0.67 0.788463
Target:  5'- -gGUCUugUCCCAcGCUguagGCUGUcGCCCc -3'
miRNA:   3'- gaCGGGugAGGGU-CGG----UGAUAuCGGG- -5'
2737 5' -57.4 NC_001491.2 + 73992 0.7 0.620341
Target:  5'- -aGCCCucGCUCCCGccgcgccgccGCCGCagcAGCCCu -3'
miRNA:   3'- gaCGGG--UGAGGGU----------CGGUGauaUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.