miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2737 5' -57.4 NC_001491.2 + 74056 0.7 0.620341
Target:  5'- -aGCCCucGCUCCCGccgcgccgccGCCGCagcAGCCCu -3'
miRNA:   3'- gaCGGG--UGAGGGU----------CGGUGauaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 74120 0.7 0.620341
Target:  5'- -aGCCCucGCUCCCGccgcgccgccGCCGCagcAGCCCu -3'
miRNA:   3'- gaCGGG--UGAGGGU----------CGGUGauaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 74184 0.7 0.620341
Target:  5'- -aGCCCucGCUCCCGccgcgccgccGCCGCagcAGCCCu -3'
miRNA:   3'- gaCGGG--UGAGGGU----------CGGUGauaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 74248 0.7 0.620341
Target:  5'- -aGCCCucGCUCCCGccgcgccgccGCCGCagcAGCCCu -3'
miRNA:   3'- gaCGGG--UGAGGGU----------CGGUGauaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 78279 0.66 0.856312
Target:  5'- uCUGCaCguUUCuggCCAGCUGCUGUauAGCCCu -3'
miRNA:   3'- -GACG-GguGAG---GGUCGGUGAUA--UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 80059 0.66 0.848464
Target:  5'- -aGUCCAC-CCCAuCCACccAUAGCUCc -3'
miRNA:   3'- gaCGGGUGaGGGUcGGUGa-UAUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 81276 0.69 0.681526
Target:  5'- gCUGCCCAaagauuggCCUugGGCC-CUGgGGCCCa -3'
miRNA:   3'- -GACGGGUga------GGG--UCGGuGAUaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 85694 0.68 0.711685
Target:  5'- gUGUCUcCU-CCGGCCACggcggcGUGGCCCa -3'
miRNA:   3'- gACGGGuGAgGGUCGGUGa-----UAUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 86605 0.67 0.806434
Target:  5'- -gGCCaCGCgaguuUCCgAGCCGCgcUAGCUCg -3'
miRNA:   3'- gaCGG-GUG-----AGGgUCGGUGauAUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 94956 0.67 0.806434
Target:  5'- -gGCUC---CCCAGCCAUggUGUAGUCCg -3'
miRNA:   3'- gaCGGGugaGGGUCGGUG--AUAUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 105462 0.68 0.701687
Target:  5'- -aGCaCCugUCCCGGCCuACgc-AGaCCCa -3'
miRNA:   3'- gaCG-GGugAGGGUCGG-UGauaUC-GGG- -5'
2737 5' -57.4 NC_001491.2 + 111678 0.67 0.768991
Target:  5'- aCUGCCgggGCUCCCcgacugcAGCCACUGguggacUGGCUg -3'
miRNA:   3'- -GACGGg--UGAGGG-------UCGGUGAU------AUCGGg -5'
2737 5' -57.4 NC_001491.2 + 112967 0.67 0.806434
Target:  5'- -gGCUCuCUCUCGGgCGCg--GGCCCg -3'
miRNA:   3'- gaCGGGuGAGGGUCgGUGauaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 113087 0.68 0.731468
Target:  5'- --uUCCGCUUCCGGCCAC----GCCCc -3'
miRNA:   3'- gacGGGUGAGGGUCGGUGauauCGGG- -5'
2737 5' -57.4 NC_001491.2 + 114448 0.77 0.266493
Target:  5'- gCUGCCCaucaccgagGCUCCCcGCCGCcg-AGCCCc -3'
miRNA:   3'- -GACGGG---------UGAGGGuCGGUGauaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 114923 0.68 0.741235
Target:  5'- -aGCgCCAC-CUCAGCCGCgc-GGUCCu -3'
miRNA:   3'- gaCG-GGUGaGGGUCGGUGauaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 115621 0.7 0.640786
Target:  5'- aCUGCCaCACUCCgCGGCCcagcgacgcgGCUugcgcGGCCUa -3'
miRNA:   3'- -GACGG-GUGAGG-GUCGG----------UGAua---UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 115923 0.7 0.599932
Target:  5'- -gGCCCAC-CUCAGCCAggAggcgauGCCCg -3'
miRNA:   3'- gaCGGGUGaGGGUCGGUgaUau----CGGG- -5'
2737 5' -57.4 NC_001491.2 + 115989 0.78 0.238699
Target:  5'- -cGCCCGCUCCCgggggcagcagcaccAGCCGCagaaGGCCCg -3'
miRNA:   3'- gaCGGGUGAGGG---------------UCGGUGaua-UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 116173 0.69 0.660183
Target:  5'- -aGCCCuucuccgGCUCCgCGGCCGCggaggggAGCCUu -3'
miRNA:   3'- gaCGGG-------UGAGG-GUCGGUGaua----UCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.