Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2737 | 5' | -57.4 | NC_001491.2 | + | 116532 | 0.66 | 0.821217 |
Target: 5'- cCUGCCCucccgaggcgcuguGCUccaaCCCGGCCggGCUGgagacggcGGCCCu -3' miRNA: 3'- -GACGGG--------------UGA----GGGUCGG--UGAUa-------UCGGG- -5' |
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2737 | 5' | -57.4 | NC_001491.2 | + | 116984 | 0.67 | 0.806434 |
Target: 5'- cCUGCCaCACg--CGGCCGCcucgGUGGCCa -3' miRNA: 3'- -GACGG-GUGaggGUCGGUGa---UAUCGGg -5' |
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2737 | 5' | -57.4 | NC_001491.2 | + | 117782 | 0.82 | 0.122736 |
Target: 5'- -cGCCCGCUCCCAGCCGCccgggaggaGGCCUc -3' miRNA: 3'- gaCGGGUGAGGGUCGGUGaua------UCGGG- -5' |
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2737 | 5' | -57.4 | NC_001491.2 | + | 118346 | 0.68 | 0.721615 |
Target: 5'- cCU-CCUAC-CCCGGCgGCUGccGCCCa -3' miRNA: 3'- -GAcGGGUGaGGGUCGgUGAUauCGGG- -5' |
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2737 | 5' | -57.4 | NC_001491.2 | + | 119743 | 0.69 | 0.671381 |
Target: 5'- -aGCCCACUCCCucGGCUcCUcccaAGCUCg -3' miRNA: 3'- gaCGGGUGAGGG--UCGGuGAua--UCGGG- -5' |
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2737 | 5' | -57.4 | NC_001491.2 | + | 134029 | 0.66 | 0.832189 |
Target: 5'- -aGCCguCUCCguuCGGCCGCcgAUGcGCCCc -3' miRNA: 3'- gaCGGguGAGG---GUCGGUGa-UAU-CGGG- -5' |
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2737 | 5' | -57.4 | NC_001491.2 | + | 139688 | 0.66 | 0.821217 |
Target: 5'- -cGCCCGCggccgcaagcucccUCuCCAGCUGCccucGGCCCa -3' miRNA: 3'- gaCGGGUG--------------AG-GGUCGGUGaua-UCGGG- -5' |
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2737 | 5' | -57.4 | NC_001491.2 | + | 140082 | 0.66 | 0.832189 |
Target: 5'- -cGCCCGCggaggCCUGGCCGCgcGUGuaCCg -3' miRNA: 3'- gaCGGGUGa----GGGUCGGUGa-UAUcgGG- -5' |
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2737 | 5' | -57.4 | NC_001491.2 | + | 140340 | 0.73 | 0.453284 |
Target: 5'- -cGCCCGauCUCCCGGCCACUGaa--CCa -3' miRNA: 3'- gaCGGGU--GAGGGUCGGUGAUaucgGG- -5' |
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2737 | 5' | -57.4 | NC_001491.2 | + | 141829 | 0.66 | 0.848464 |
Target: 5'- -aGCCCAgcUCCGGCgACcccGGCCCa -3' miRNA: 3'- gaCGGGUgaGGGUCGgUGauaUCGGG- -5' |
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2737 | 5' | -57.4 | NC_001491.2 | + | 141859 | 0.67 | 0.788463 |
Target: 5'- -gGCCCAg-CCCAGCUccgGCgaccccGGCCCa -3' miRNA: 3'- gaCGGGUgaGGGUCGG---UGaua---UCGGG- -5' |
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2737 | 5' | -57.4 | NC_001491.2 | + | 146159 | 0.66 | 0.815188 |
Target: 5'- -gGCCaCGCUCCCGGUgAUgaaGGaCCCg -3' miRNA: 3'- gaCGG-GUGAGGGUCGgUGauaUC-GGG- -5' |
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2737 | 5' | -57.4 | NC_001491.2 | + | 146213 | 0.71 | 0.548445 |
Target: 5'- -gGCCCAgagcgcgUUCCCGGCCGCcAUGGCg- -3' miRNA: 3'- gaCGGGU-------GAGGGUCGGUGaUAUCGgg -5' |
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2737 | 5' | -57.4 | NC_001491.2 | + | 147059 | 0.67 | 0.779263 |
Target: 5'- -gGCuCCcCUCCgCGGCCGCgg-AGCCg -3' miRNA: 3'- gaCG-GGuGAGG-GUCGGUGauaUCGGg -5' |
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2737 | 5' | -57.4 | NC_001491.2 | + | 148607 | 0.66 | 0.832189 |
Target: 5'- -gGCCCcgAgUCCCcaucgguuGGCCGCgcgGUGGCUCu -3' miRNA: 3'- gaCGGG--UgAGGG--------UCGGUGa--UAUCGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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