miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2737 5' -57.4 NC_001491.2 + 148607 0.66 0.832189
Target:  5'- -gGCCCcgAgUCCCcaucgguuGGCCGCgcgGUGGCUCu -3'
miRNA:   3'- gaCGGG--UgAGGG--------UCGGUGa--UAUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 147059 0.67 0.779263
Target:  5'- -gGCuCCcCUCCgCGGCCGCgg-AGCCg -3'
miRNA:   3'- gaCG-GGuGAGG-GUCGGUGauaUCGGg -5'
2737 5' -57.4 NC_001491.2 + 146213 0.71 0.548445
Target:  5'- -gGCCCAgagcgcgUUCCCGGCCGCcAUGGCg- -3'
miRNA:   3'- gaCGGGU-------GAGGGUCGGUGaUAUCGgg -5'
2737 5' -57.4 NC_001491.2 + 146159 0.66 0.815188
Target:  5'- -gGCCaCGCUCCCGGUgAUgaaGGaCCCg -3'
miRNA:   3'- gaCGG-GUGAGGGUCGgUGauaUC-GGG- -5'
2737 5' -57.4 NC_001491.2 + 141859 0.67 0.788463
Target:  5'- -gGCCCAg-CCCAGCUccgGCgaccccGGCCCa -3'
miRNA:   3'- gaCGGGUgaGGGUCGG---UGaua---UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 141829 0.66 0.848464
Target:  5'- -aGCCCAgcUCCGGCgACcccGGCCCa -3'
miRNA:   3'- gaCGGGUgaGGGUCGgUGauaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 140340 0.73 0.453284
Target:  5'- -cGCCCGauCUCCCGGCCACUGaa--CCa -3'
miRNA:   3'- gaCGGGU--GAGGGUCGGUGAUaucgGG- -5'
2737 5' -57.4 NC_001491.2 + 140082 0.66 0.832189
Target:  5'- -cGCCCGCggaggCCUGGCCGCgcGUGuaCCg -3'
miRNA:   3'- gaCGGGUGa----GGGUCGGUGa-UAUcgGG- -5'
2737 5' -57.4 NC_001491.2 + 139688 0.66 0.821217
Target:  5'- -cGCCCGCggccgcaagcucccUCuCCAGCUGCccucGGCCCa -3'
miRNA:   3'- gaCGGGUG--------------AG-GGUCGGUGaua-UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 134029 0.66 0.832189
Target:  5'- -aGCCguCUCCguuCGGCCGCcgAUGcGCCCc -3'
miRNA:   3'- gaCGGguGAGG---GUCGGUGa-UAU-CGGG- -5'
2737 5' -57.4 NC_001491.2 + 119743 0.69 0.671381
Target:  5'- -aGCCCACUCCCucGGCUcCUcccaAGCUCg -3'
miRNA:   3'- gaCGGGUGAGGG--UCGGuGAua--UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 118346 0.68 0.721615
Target:  5'- cCU-CCUAC-CCCGGCgGCUGccGCCCa -3'
miRNA:   3'- -GAcGGGUGaGGGUCGgUGAUauCGGG- -5'
2737 5' -57.4 NC_001491.2 + 117782 0.82 0.122736
Target:  5'- -cGCCCGCUCCCAGCCGCccgggaggaGGCCUc -3'
miRNA:   3'- gaCGGGUGAGGGUCGGUGaua------UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 116984 0.67 0.806434
Target:  5'- cCUGCCaCACg--CGGCCGCcucgGUGGCCa -3'
miRNA:   3'- -GACGG-GUGaggGUCGGUGa---UAUCGGg -5'
2737 5' -57.4 NC_001491.2 + 116532 0.66 0.821217
Target:  5'- cCUGCCCucccgaggcgcuguGCUccaaCCCGGCCggGCUGgagacggcGGCCCu -3'
miRNA:   3'- -GACGGG--------------UGA----GGGUCGG--UGAUa-------UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 116173 0.69 0.660183
Target:  5'- -aGCCCuucuccgGCUCCgCGGCCGCggaggggAGCCUu -3'
miRNA:   3'- gaCGGG-------UGAGG-GUCGGUGaua----UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 115989 0.78 0.238699
Target:  5'- -cGCCCGCUCCCgggggcagcagcaccAGCCGCagaaGGCCCg -3'
miRNA:   3'- gaCGGGUGAGGG---------------UCGGUGaua-UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 115923 0.7 0.599932
Target:  5'- -gGCCCAC-CUCAGCCAggAggcgauGCCCg -3'
miRNA:   3'- gaCGGGUGaGGGUCGGUgaUau----CGGG- -5'
2737 5' -57.4 NC_001491.2 + 115621 0.7 0.640786
Target:  5'- aCUGCCaCACUCCgCGGCCcagcgacgcgGCUugcgcGGCCUa -3'
miRNA:   3'- -GACGG-GUGAGG-GUCGG----------UGAua---UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 114923 0.68 0.741235
Target:  5'- -aGCgCCAC-CUCAGCCGCgc-GGUCCu -3'
miRNA:   3'- gaCG-GGUGaGGGUCGGUGauaUCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.