miRNA display CGI


Results 41 - 55 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2737 5' -57.4 NC_001491.2 + 146159 0.66 0.815188
Target:  5'- -gGCCaCGCUCCCGGUgAUgaaGGaCCCg -3'
miRNA:   3'- gaCGG-GUGAGGGUCGgUGauaUC-GGG- -5'
2737 5' -57.4 NC_001491.2 + 41238 0.67 0.806434
Target:  5'- -gGCCuCGCUCCgAGCgGCUucGGCUUg -3'
miRNA:   3'- gaCGG-GUGAGGgUCGgUGAuaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 86605 0.67 0.806434
Target:  5'- -gGCCaCGCgaguuUCCgAGCCGCgcUAGCUCg -3'
miRNA:   3'- gaCGG-GUG-----AGGgUCGGUGauAUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 111678 0.67 0.768991
Target:  5'- aCUGCCgggGCUCCCcgacugcAGCCACUGguggacUGGCUg -3'
miRNA:   3'- -GACGGg--UGAGGG-------UCGGUGAU------AUCGGg -5'
2737 5' -57.4 NC_001491.2 + 49642 0.67 0.76993
Target:  5'- cCUGCCCGCUCCaugucuGCCGUggggcacAGCCUg -3'
miRNA:   3'- -GACGGGUGAGGgu----CGGUGaua----UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 22893 0.67 0.779263
Target:  5'- gUGCUaGCU-CCAGCCAgaGUAcGCCCg -3'
miRNA:   3'- gACGGgUGAgGGUCGGUgaUAU-CGGG- -5'
2737 5' -57.4 NC_001491.2 + 147059 0.67 0.779263
Target:  5'- -gGCuCCcCUCCgCGGCCGCgg-AGCCg -3'
miRNA:   3'- gaCG-GGuGAGG-GUCGGUGauaUCGGg -5'
2737 5' -57.4 NC_001491.2 + 141859 0.67 0.788463
Target:  5'- -gGCCCAg-CCCAGCUccgGCgaccccGGCCCa -3'
miRNA:   3'- gaCGGGUgaGGGUCGG---UGaua---UCGGG- -5'
2737 5' -57.4 NC_001491.2 + 70381 0.67 0.788463
Target:  5'- -gGUCUugUCCCAcGCUguagGCUGUcGCCCc -3'
miRNA:   3'- gaCGGGugAGGGU-CGG----UGAUAuCGGG- -5'
2737 5' -57.4 NC_001491.2 + 3232 0.67 0.797523
Target:  5'- -cGCCCGCuUCCUAGC-GCguacGCCCu -3'
miRNA:   3'- gaCGGGUG-AGGGUCGgUGauauCGGG- -5'
2737 5' -57.4 NC_001491.2 + 112967 0.67 0.806434
Target:  5'- -gGCUCuCUCUCGGgCGCg--GGCCCg -3'
miRNA:   3'- gaCGGGuGAGGGUCgGUGauaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 1262 0.67 0.806434
Target:  5'- -gGCUCuCUCUCGGgCGCg--GGCCCg -3'
miRNA:   3'- gaCGGGuGAGGGUCgGUGauaUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 116984 0.67 0.806434
Target:  5'- cCUGCCaCACg--CGGCCGCcucgGUGGCCa -3'
miRNA:   3'- -GACGG-GUGaggGUCGGUGa---UAUCGGg -5'
2737 5' -57.4 NC_001491.2 + 94956 0.67 0.806434
Target:  5'- -gGCUC---CCCAGCCAUggUGUAGUCCg -3'
miRNA:   3'- gaCGGGugaGGGUCGGUG--AUAUCGGG- -5'
2737 5' -57.4 NC_001491.2 + 41646 0.66 0.856312
Target:  5'- aUGCCUcgUCCCAGCUAacuuCUGUcGCCg -3'
miRNA:   3'- gACGGGugAGGGUCGGU----GAUAuCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.