miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27370 3' -58.9 NC_005857.1 + 23852 0.66 0.554017
Target:  5'- gGGaCAGUcgauaacgaGCCuGCAGaaCGggcUGACGACGGCg -3'
miRNA:   3'- -CC-GUCG---------CGG-CGUCa-GC---ACUGCUGCCG- -5'
27370 3' -58.9 NC_005857.1 + 20225 0.66 0.554017
Target:  5'- gGGaCAGUcgauaacgaGCCuGCAGaaCGggcUGACGACGGCg -3'
miRNA:   3'- -CC-GUCG---------CGG-CGUCa-GC---ACUGCUGCCG- -5'
27370 3' -58.9 NC_005857.1 + 22189 0.66 0.543585
Target:  5'- -uCAGCGCUGaaCAGUC-UGACGG-GGCg -3'
miRNA:   3'- ccGUCGCGGC--GUCAGcACUGCUgCCG- -5'
27370 3' -58.9 NC_005857.1 + 41136 0.66 0.543585
Target:  5'- cGGCcagcgcacgaugAGCGCCaGCGGUagaaacgcCGUGGCGAgcagcugcugUGGCc -3'
miRNA:   3'- -CCG------------UCGCGG-CGUCA--------GCACUGCU----------GCCG- -5'
27370 3' -58.9 NC_005857.1 + 42996 0.66 0.533218
Target:  5'- cGGCAGCuGCgCGaccUgGUGAUGAUGGUg -3'
miRNA:   3'- -CCGUCG-CG-GCgucAgCACUGCUGCCG- -5'
27370 3' -58.9 NC_005857.1 + 43569 0.66 0.522922
Target:  5'- aGCAGC-CUGgcCAaUgGUGGCGACGGCu -3'
miRNA:   3'- cCGUCGcGGC--GUcAgCACUGCUGCCG- -5'
27370 3' -58.9 NC_005857.1 + 50346 0.67 0.48257
Target:  5'- uGGCAGCGUaggGCAGgaaaGU-ACGugGGUu -3'
miRNA:   3'- -CCGUCGCGg--CGUCag--CAcUGCugCCG- -5'
27370 3' -58.9 NC_005857.1 + 31228 0.67 0.443781
Target:  5'- cGGCGGCaCCGgacCAGgCGUaAUGACGGCc -3'
miRNA:   3'- -CCGUCGcGGC---GUCaGCAcUGCUGCCG- -5'
27370 3' -58.9 NC_005857.1 + 4068 0.68 0.434359
Target:  5'- cGGCGGCGgCGCAG-C-UGugGGCuGUa -3'
miRNA:   3'- -CCGUCGCgGCGUCaGcACugCUGcCG- -5'
27370 3' -58.9 NC_005857.1 + 21391 0.68 0.425055
Target:  5'- cGGCuggAGUGaCCGggcuuCAGUCGUGACGuuacaGGCu -3'
miRNA:   3'- -CCG---UCGC-GGC-----GUCAGCACUGCug---CCG- -5'
27370 3' -58.9 NC_005857.1 + 35625 0.68 0.422287
Target:  5'- uGCAGCuaaaaauuaaagccGCCGCGcUCGaGGCGuCGGCg -3'
miRNA:   3'- cCGUCG--------------CGGCGUcAGCaCUGCuGCCG- -5'
27370 3' -58.9 NC_005857.1 + 51545 0.69 0.358421
Target:  5'- uGGCAGCaGCUGCcucagucgagguggaAGUCGUcauucaGGCuGCGGCg -3'
miRNA:   3'- -CCGUCG-CGGCG---------------UCAGCA------CUGcUGCCG- -5'
27370 3' -58.9 NC_005857.1 + 3207 0.69 0.338954
Target:  5'- cGCAGCuGCUGCAGUCGcGucaGugGGg -3'
miRNA:   3'- cCGUCG-CGGCGUCAGCaCug-CugCCg -5'
27370 3' -58.9 NC_005857.1 + 23119 0.7 0.315715
Target:  5'- uGCAGCGCCGUGGcaucugcuuucUUGuUGACGcUGGCg -3'
miRNA:   3'- cCGUCGCGGCGUC-----------AGC-ACUGCuGCCG- -5'
27370 3' -58.9 NC_005857.1 + 17544 0.71 0.286633
Target:  5'- uGGuCAGCGCCaGCG---GUGcCGACGGCa -3'
miRNA:   3'- -CC-GUCGCGG-CGUcagCACuGCUGCCG- -5'
27370 3' -58.9 NC_005857.1 + 9720 0.71 0.2533
Target:  5'- uGGCGGUGUCGCAGcagCGcaggcUGGCGuCGGUu -3'
miRNA:   3'- -CCGUCGCGGCGUCa--GC-----ACUGCuGCCG- -5'
27370 3' -58.9 NC_005857.1 + 15769 0.72 0.234872
Target:  5'- uGGCGGUGCCugGCAGacCGUGcuggaaACGGCGGUu -3'
miRNA:   3'- -CCGUCGCGG--CGUCa-GCAC------UGCUGCCG- -5'
27370 3' -58.9 NC_005857.1 + 24094 1.14 0.000205
Target:  5'- cGGCAGCGCCGCAGUCGUGACGACGGCg -3'
miRNA:   3'- -CCGUCGCGGCGUCAGCACUGCUGCCG- -5'
27370 3' -58.9 NC_005857.1 + 20468 1.14 0.000205
Target:  5'- cGGCAGCGCCGCAGUCGUGACGACGGCg -3'
miRNA:   3'- -CCGUCGCGGCGUCAGCACUGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.