miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27371 3' -58.5 NC_005857.1 + 9788 0.66 0.491164
Target:  5'- --cGCUGcUGCgaCACCGCCauuuuuuaucgccgCUGCCGUa -3'
miRNA:   3'- cauCGACuACG--GUGGCGGa-------------GACGGCA- -5'
27371 3' -58.5 NC_005857.1 + 19189 0.66 0.475862
Target:  5'- --cGCUGAUuuuacugGCCugCGCaCUUugUGCCGUg -3'
miRNA:   3'- cauCGACUA-------CGGugGCG-GAG--ACGGCA- -5'
27371 3' -58.5 NC_005857.1 + 18331 0.66 0.466796
Target:  5'- -cAGCUGGU-CUGCCGCCUgcGCCGc -3'
miRNA:   3'- caUCGACUAcGGUGGCGGAgaCGGCa -5'
27371 3' -58.5 NC_005857.1 + 9542 0.67 0.446975
Target:  5'- uUAGCcGAUGCCAUcagcuuaagCGCCUCaGCUGc -3'
miRNA:   3'- cAUCGaCUACGGUG---------GCGGAGaCGGCa -5'
27371 3' -58.5 NC_005857.1 + 10644 0.67 0.446975
Target:  5'- -cAGCUGAgGCCGCgcggGCCgauaucgacaUCUGCCGg -3'
miRNA:   3'- caUCGACUaCGGUGg---CGG----------AGACGGCa -5'
27371 3' -58.5 NC_005857.1 + 8301 0.67 0.418148
Target:  5'- -aAGCUGAaugGUCucGCgaGCCUCUGCCGc -3'
miRNA:   3'- caUCGACUa--CGG--UGg-CGGAGACGGCa -5'
27371 3' -58.5 NC_005857.1 + 20760 0.68 0.381528
Target:  5'- -cAGCUGuucUGCC-CCGCCgcauUCUGCCc- -3'
miRNA:   3'- caUCGACu--ACGGuGGCGG----AGACGGca -5'
27371 3' -58.5 NC_005857.1 + 24387 0.68 0.381528
Target:  5'- -cAGCUGuucUGCC-CCGCCgcauUCUGCCc- -3'
miRNA:   3'- caUCGACu--ACGGuGGCGG----AGACGGca -5'
27371 3' -58.5 NC_005857.1 + 18969 0.68 0.381528
Target:  5'- cGUGGCUc--GCUuauUCGCUUCUGCCGUa -3'
miRNA:   3'- -CAUCGAcuaCGGu--GGCGGAGACGGCA- -5'
27371 3' -58.5 NC_005857.1 + 9472 0.68 0.372713
Target:  5'- -aAGCUGAUGgCAUCGgCUaaGCCGg -3'
miRNA:   3'- caUCGACUACgGUGGCgGAgaCGGCa -5'
27371 3' -58.5 NC_005857.1 + 20924 1.07 0.000496
Target:  5'- uGUAGCUGAUGCCACCGCCUCUGCCGUg -3'
miRNA:   3'- -CAUCGACUACGGUGGCGGAGACGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.