Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27371 | 3' | -58.5 | NC_005857.1 | + | 8301 | 0.67 | 0.418148 |
Target: 5'- -aAGCUGAaugGUCucGCgaGCCUCUGCCGc -3' miRNA: 3'- caUCGACUa--CGG--UGg-CGGAGACGGCa -5' |
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27371 | 3' | -58.5 | NC_005857.1 | + | 9472 | 0.68 | 0.372713 |
Target: 5'- -aAGCUGAUGgCAUCGgCUaaGCCGg -3' miRNA: 3'- caUCGACUACgGUGGCgGAgaCGGCa -5' |
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27371 | 3' | -58.5 | NC_005857.1 | + | 9542 | 0.67 | 0.446975 |
Target: 5'- uUAGCcGAUGCCAUcagcuuaagCGCCUCaGCUGc -3' miRNA: 3'- cAUCGaCUACGGUG---------GCGGAGaCGGCa -5' |
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27371 | 3' | -58.5 | NC_005857.1 | + | 9788 | 0.66 | 0.491164 |
Target: 5'- --cGCUGcUGCgaCACCGCCauuuuuuaucgccgCUGCCGUa -3' miRNA: 3'- cauCGACuACG--GUGGCGGa-------------GACGGCA- -5' |
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27371 | 3' | -58.5 | NC_005857.1 | + | 10644 | 0.67 | 0.446975 |
Target: 5'- -cAGCUGAgGCCGCgcggGCCgauaucgacaUCUGCCGg -3' miRNA: 3'- caUCGACUaCGGUGg---CGG----------AGACGGCa -5' |
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27371 | 3' | -58.5 | NC_005857.1 | + | 18331 | 0.66 | 0.466796 |
Target: 5'- -cAGCUGGU-CUGCCGCCUgcGCCGc -3' miRNA: 3'- caUCGACUAcGGUGGCGGAgaCGGCa -5' |
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27371 | 3' | -58.5 | NC_005857.1 | + | 18969 | 0.68 | 0.381528 |
Target: 5'- cGUGGCUc--GCUuauUCGCUUCUGCCGUa -3' miRNA: 3'- -CAUCGAcuaCGGu--GGCGGAGACGGCA- -5' |
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27371 | 3' | -58.5 | NC_005857.1 | + | 19189 | 0.66 | 0.475862 |
Target: 5'- --cGCUGAUuuuacugGCCugCGCaCUUugUGCCGUg -3' miRNA: 3'- cauCGACUA-------CGGugGCG-GAG--ACGGCA- -5' |
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27371 | 3' | -58.5 | NC_005857.1 | + | 20760 | 0.68 | 0.381528 |
Target: 5'- -cAGCUGuucUGCC-CCGCCgcauUCUGCCc- -3' miRNA: 3'- caUCGACu--ACGGuGGCGG----AGACGGca -5' |
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27371 | 3' | -58.5 | NC_005857.1 | + | 20924 | 1.07 | 0.000496 |
Target: 5'- uGUAGCUGAUGCCACCGCCUCUGCCGUg -3' miRNA: 3'- -CAUCGACUACGGUGGCGGAGACGGCA- -5' |
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27371 | 3' | -58.5 | NC_005857.1 | + | 24387 | 0.68 | 0.381528 |
Target: 5'- -cAGCUGuucUGCC-CCGCCgcauUCUGCCc- -3' miRNA: 3'- caUCGACu--ACGGuGGCGG----AGACGGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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