miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27371 5' -53.5 NC_005857.1 + 19311 0.66 0.786897
Target:  5'- gGGCcuGCagucuacuGUCAGCCAGCAGGGa -3'
miRNA:   3'- aCUGc-UGcuuu----CAGUCGGUCGUCCUg -5'
27371 5' -53.5 NC_005857.1 + 38691 0.66 0.745244
Target:  5'- cGGCGuaaGAguuGAGUCAGCCAGaauGACg -3'
miRNA:   3'- aCUGCug-CU---UUCAGUCGGUCgucCUG- -5'
27371 5' -53.5 NC_005857.1 + 24316 0.66 0.745244
Target:  5'- -uGCGGCGggGcagaaCAGCUGGCAGGGg -3'
miRNA:   3'- acUGCUGCuuUca---GUCGGUCGUCCUg -5'
27371 5' -53.5 NC_005857.1 + 20690 0.66 0.745244
Target:  5'- -uGCGGCGggGcagaaCAGCUGGCAGGGg -3'
miRNA:   3'- acUGCUGCuuUca---GUCGGUCGUCCUg -5'
27371 5' -53.5 NC_005857.1 + 44982 0.67 0.712697
Target:  5'- aGACaGACcuGAccGGG-CGGCUGGCAGGGCg -3'
miRNA:   3'- aCUG-CUG--CU--UUCaGUCGGUCGUCCUG- -5'
27371 5' -53.5 NC_005857.1 + 1975 0.67 0.712697
Target:  5'- cUGGUGGCGAAGcgcuGUUGcGCCAGCAGGGu -3'
miRNA:   3'- -ACUGCUGCUUU----CAGU-CGGUCGUCCUg -5'
27371 5' -53.5 NC_005857.1 + 3453 0.68 0.667066
Target:  5'- gUGGCGACcaGAaaucgcguuauGAGUCAuaugcgcuuggccGCCAGUGGGGCu -3'
miRNA:   3'- -ACUGCUG--CU-----------UUCAGU-------------CGGUCGUCCUG- -5'
27371 5' -53.5 NC_005857.1 + 21936 0.69 0.611831
Target:  5'- aGACGcuGCaGAAuaccGUCAG-CAGCAGGGCa -3'
miRNA:   3'- aCUGC--UG-CUUu---CAGUCgGUCGUCCUG- -5'
27371 5' -53.5 NC_005857.1 + 23940 0.69 0.567008
Target:  5'- cUGACGAaccGGG-CAGCCAGguGGAa -3'
miRNA:   3'- -ACUGCUgcuUUCaGUCGGUCguCCUg -5'
27371 5' -53.5 NC_005857.1 + 11676 0.69 0.567008
Target:  5'- aGGCGACGAAAG--AGUCGGCAGa-- -3'
miRNA:   3'- aCUGCUGCUUUCagUCGGUCGUCcug -5'
27371 5' -53.5 NC_005857.1 + 12970 0.73 0.364405
Target:  5'- cGGCGACGAuuuccUCGGCUgaauGCGGGACg -3'
miRNA:   3'- aCUGCUGCUuuc--AGUCGGu---CGUCCUG- -5'
27371 5' -53.5 NC_005857.1 + 20313 0.79 0.165188
Target:  5'- cUGACGAaccGGGUCAGCCAGguGGAa -3'
miRNA:   3'- -ACUGCUgcuUUCAGUCGGUCguCCUg -5'
27371 5' -53.5 NC_005857.1 + 22810 0.89 0.034897
Target:  5'- cUGACGACGAccGUCAaCCAGCAGGGCa -3'
miRNA:   3'- -ACUGCUGCUuuCAGUcGGUCGUCCUG- -5'
27371 5' -53.5 NC_005857.1 + 20958 1.1 0.001043
Target:  5'- cGACGACGAAAGUCAGCCAGCAGGACa -3'
miRNA:   3'- aCUGCUGCUUUCAGUCGGUCGUCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.