miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27372 3' -55.6 NC_005857.1 + 49493 0.66 0.657365
Target:  5'- -aUUGCAGcGCACCcucgGugGCGGCAu -3'
miRNA:   3'- gcGACGUCuUGUGGca--CugCGUCGUu -5'
27372 3' -55.6 NC_005857.1 + 12377 0.66 0.623676
Target:  5'- aGCUGCAGGcgaaagauauGCgACCG-GGCGguGCu- -3'
miRNA:   3'- gCGACGUCU----------UG-UGGCaCUGCguCGuu -5'
27372 3' -55.6 NC_005857.1 + 11362 0.66 0.612448
Target:  5'- gCGCUGCAGGucaGCAUCGcUGGCGCc---- -3'
miRNA:   3'- -GCGACGUCU---UGUGGC-ACUGCGucguu -5'
27372 3' -55.6 NC_005857.1 + 15935 0.67 0.590055
Target:  5'- aCGCUGCAGAgcuACACagaaGUgauuGACGCgAGCu- -3'
miRNA:   3'- -GCGACGUCU---UGUGg---CA----CUGCG-UCGuu -5'
27372 3' -55.6 NC_005857.1 + 47705 0.67 0.578909
Target:  5'- --gUGCuuuAUGCCGUGGCGCAGCu- -3'
miRNA:   3'- gcgACGucuUGUGGCACUGCGUCGuu -5'
27372 3' -55.6 NC_005857.1 + 11259 0.67 0.578909
Target:  5'- aGCUGCGGGaaGCAgCGaagaaaaaUGGCGcCAGCGAu -3'
miRNA:   3'- gCGACGUCU--UGUgGC--------ACUGC-GUCGUU- -5'
27372 3' -55.6 NC_005857.1 + 5301 0.67 0.556764
Target:  5'- cCGUUGCAc--CACCGgccaGACGCGGUAAc -3'
miRNA:   3'- -GCGACGUcuuGUGGCa---CUGCGUCGUU- -5'
27372 3' -55.6 NC_005857.1 + 46442 0.69 0.461028
Target:  5'- uCGCcGCAGGuucucAUACUGcUGACGCAGCu- -3'
miRNA:   3'- -GCGaCGUCU-----UGUGGC-ACUGCGUCGuu -5'
27372 3' -55.6 NC_005857.1 + 46190 0.69 0.461028
Target:  5'- aGCUGCGGAAauuccaaGCCGcUGGCG-AGCAu -3'
miRNA:   3'- gCGACGUCUUg------UGGC-ACUGCgUCGUu -5'
27372 3' -55.6 NC_005857.1 + 22755 0.71 0.340011
Target:  5'- uGCUGCGGccAGCGCUcagGAUGCGGCAGa -3'
miRNA:   3'- gCGACGUC--UUGUGGca-CUGCGUCGUU- -5'
27372 3' -55.6 NC_005857.1 + 41114 0.72 0.300004
Target:  5'- aGCgGUAGaAACGCCGUGGCG-AGCAGc -3'
miRNA:   3'- gCGaCGUC-UUGUGGCACUGCgUCGUU- -5'
27372 3' -55.6 NC_005857.1 + 21209 0.73 0.256921
Target:  5'- gCGCUGCAGAcguuacagaAUACgGUGACGCAaCAGg -3'
miRNA:   3'- -GCGACGUCU---------UGUGgCACUGCGUcGUU- -5'
27372 3' -55.6 NC_005857.1 + 11742 0.74 0.239883
Target:  5'- aGCUGCAGAGCcucGCCGUcgggcuucuugagacGACGCAGgAGc -3'
miRNA:   3'- gCGACGUCUUG---UGGCA---------------CUGCGUCgUU- -5'
27372 3' -55.6 NC_005857.1 + 19444 0.78 0.129228
Target:  5'- aGcCUGCAGAACAUUGUGACGCAaCAGg -3'
miRNA:   3'- gC-GACGUCUUGUGGCACUGCGUcGUU- -5'
27372 3' -55.6 NC_005857.1 + 21938 0.83 0.049248
Target:  5'- aCGCUGCAGAAUACCGUca-GCAGCAGg -3'
miRNA:   3'- -GCGACGUCUUGUGGCAcugCGUCGUU- -5'
27372 3' -55.6 NC_005857.1 + 21086 0.89 0.021244
Target:  5'- aCGCUGCAGAACACgGUuACGCAGCAAg -3'
miRNA:   3'- -GCGACGUCUUGUGgCAcUGCGUCGUU- -5'
27372 3' -55.6 NC_005857.1 + 23070 0.91 0.015228
Target:  5'- aGcCUGCAGAACACgGUGACGCAGCAGg -3'
miRNA:   3'- gC-GACGUCUUGUGgCACUGCGUCGUU- -5'
27372 3' -55.6 NC_005857.1 + 22939 0.98 0.004118
Target:  5'- aCGCUGCAGAACACCG-GACGCAGCAAg -3'
miRNA:   3'- -GCGACGUCUUGUGGCaCUGCGUCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.