Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27372 | 5' | -51.5 | NC_005857.1 | + | 29924 | 0.67 | 0.811141 |
Target: 5'- gCUUAguuCUGCCGagcaaccucuauCCAGCAGCGCUg--- -3' miRNA: 3'- gGAAU---GACGGU------------GGUUGUCGCGGuaau -5' |
|||||||
27372 | 5' | -51.5 | NC_005857.1 | + | 49969 | 0.67 | 0.790006 |
Target: 5'- ----cCUGCCAgCCGaaacggcACAGCGCCAUc- -3' miRNA: 3'- ggaauGACGGU-GGU-------UGUCGCGGUAau -5' |
|||||||
27372 | 5' | -51.5 | NC_005857.1 | + | 21120 | 1 | 0.007605 |
Target: 5'- aUCUUACUGCCGCCAACAGCGCCAUc- -3' miRNA: 3'- -GGAAUGACGGUGGUUGUCGCGGUAau -5' |
|||||||
27372 | 5' | -51.5 | NC_005857.1 | + | 22972 | 1.09 | 0.001751 |
Target: 5'- aCCUUACUGCCACCAACAGCGCCAUUAc -3' miRNA: 3'- -GGAAUGACGGUGGUUGUCGCGGUAAU- -5' |
|||||||
27372 | 5' | -51.5 | NC_005857.1 | + | 24140 | 0.66 | 0.874474 |
Target: 5'- ---aGgaGCCugCGGCuGCGCCGUg- -3' miRNA: 3'- ggaaUgaCGGugGUUGuCGCGGUAau -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home