miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27375 3' -47.1 NC_005857.1 + 20679 0.66 0.983807
Target:  5'- cAGGGGcagaaUGCG--GCGGgGCAgAACAGCu -3'
miRNA:   3'- -UCCUC-----AUGUauUGUCgUGUgUUGUCG- -5'
27375 3' -47.1 NC_005857.1 + 24305 0.66 0.983807
Target:  5'- cAGGGGcagaaUGCG--GCGGgGCAgAACAGCu -3'
miRNA:   3'- -UCCUC-----AUGUauUGUCgUGUgUUGUCG- -5'
27375 3' -47.1 NC_005857.1 + 25289 0.66 0.981549
Target:  5'- gGGGuGUugAUAuuccgGCAGCGCcauuCAACcGCg -3'
miRNA:   3'- -UCCuCAugUAU-----UGUCGUGu---GUUGuCG- -5'
27375 3' -47.1 NC_005857.1 + 18837 0.67 0.975761
Target:  5'- cGGGAGccaGCAcuGCAGCAUugcgcgaagaauCGACAGCc -3'
miRNA:   3'- -UCCUCa--UGUauUGUCGUGu-----------GUUGUCG- -5'
27375 3' -47.1 NC_005857.1 + 23866 0.67 0.973359
Target:  5'- -cGAGccUGCAgAACgGGCugACGACGGCg -3'
miRNA:   3'- ucCUC--AUGUaUUG-UCGugUGUUGUCG- -5'
27375 3' -47.1 NC_005857.1 + 4312 0.67 0.973359
Target:  5'- cGGGGUGauaacaaaaAUAACGGUACccaACAugAGCc -3'
miRNA:   3'- uCCUCAUg--------UAUUGUCGUG---UGUugUCG- -5'
27375 3' -47.1 NC_005857.1 + 20239 0.67 0.973359
Target:  5'- -cGAGccUGCAgAACgGGCugACGACGGCg -3'
miRNA:   3'- ucCUC--AUGUaUUG-UCGugUGUUGUCG- -5'
27375 3' -47.1 NC_005857.1 + 3356 0.67 0.966606
Target:  5'- uGGuugaAGcgGCAUGAaGGCGCGCuGCAGCg -3'
miRNA:   3'- uCC----UCa-UGUAUUgUCGUGUGuUGUCG- -5'
27375 3' -47.1 NC_005857.1 + 13330 0.67 0.966606
Target:  5'- uGGuGUACucgcaacCAGUAcCGCAGCGGCg -3'
miRNA:   3'- uCCuCAUGuauu---GUCGU-GUGUUGUCG- -5'
27375 3' -47.1 NC_005857.1 + 7633 0.67 0.962811
Target:  5'- gAGGAGgAUAUGaaGCAGCAUGC--CGGCu -3'
miRNA:   3'- -UCCUCaUGUAU--UGUCGUGUGuuGUCG- -5'
27375 3' -47.1 NC_005857.1 + 11997 0.67 0.962811
Target:  5'- cGGAGcUGCuucUGGCAGUACGgGaACGGCc -3'
miRNA:   3'- uCCUC-AUGu--AUUGUCGUGUgU-UGUCG- -5'
27375 3' -47.1 NC_005857.1 + 21825 0.68 0.958726
Target:  5'- -cGAGUGCGgagGGCAGUAuCACcagccaggguAGCAGCa -3'
miRNA:   3'- ucCUCAUGUa--UUGUCGU-GUG----------UUGUCG- -5'
27375 3' -47.1 NC_005857.1 + 19700 0.68 0.94466
Target:  5'- cGGAGUACGUGcugaguuuuuAC-GCGaagGCGGCGGCa -3'
miRNA:   3'- uCCUCAUGUAU----------UGuCGUg--UGUUGUCG- -5'
27375 3' -47.1 NC_005857.1 + 23326 0.68 0.94466
Target:  5'- cGGAGUACGUGcugaguuuuuAC-GCGaagGCGGCGGCa -3'
miRNA:   3'- uCCUCAUGUAU----------UGuCGUg--UGUUGUCG- -5'
27375 3' -47.1 NC_005857.1 + 36268 0.69 0.927774
Target:  5'- --aAGUGCAUGGucuuCAGUACGCGcCAGCg -3'
miRNA:   3'- uccUCAUGUAUU----GUCGUGUGUuGUCG- -5'
27375 3' -47.1 NC_005857.1 + 23641 0.69 0.927774
Target:  5'- cGGAGgACAacgcCAGCGCgGCGGCAGUg -3'
miRNA:   3'- uCCUCaUGUauu-GUCGUG-UGUUGUCG- -5'
27375 3' -47.1 NC_005857.1 + 20014 0.69 0.927774
Target:  5'- cGGAGgACAacgcCAGCGCgGCGGCAGUg -3'
miRNA:   3'- uCCUCaUGUauu-GUCGUG-UGUUGUCG- -5'
27375 3' -47.1 NC_005857.1 + 32714 0.7 0.900801
Target:  5'- uAGGAacccGUAUccaguCAGCGCACAACAcGCg -3'
miRNA:   3'- -UCCU----CAUGuauu-GUCGUGUGUUGU-CG- -5'
27375 3' -47.1 NC_005857.1 + 22226 0.7 0.877302
Target:  5'- cGGAGaGCGgucuCAGUGCAgcCAACAGCa -3'
miRNA:   3'- uCCUCaUGUauu-GUCGUGU--GUUGUCG- -5'
27375 3' -47.1 NC_005857.1 + 12218 0.7 0.877302
Target:  5'- uGGGGGUACGcgcggucGGgGGCGCACAGagugcCAGCa -3'
miRNA:   3'- -UCCUCAUGUa------UUgUCGUGUGUU-----GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.