Results 21 - 29 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2738 | 3' | -55.7 | NC_001491.2 | + | 148964 | 0.66 | 0.921008 |
Target: 5'- -aGCGCG-GCGGAGGGC-CUGgGCc- -3' miRNA: 3'- agCGUGCgCGCUUCUCGuGAUgCGcu -5' |
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2738 | 3' | -55.7 | NC_001491.2 | + | 139859 | 0.66 | 0.915308 |
Target: 5'- cUCGCGCcCGCaGAuguacGAGCGCgcgugUGCGCGGu -3' miRNA: 3'- -AGCGUGcGCG-CUu----CUCGUG-----AUGCGCU- -5' |
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2738 | 3' | -55.7 | NC_001491.2 | + | 82291 | 0.66 | 0.915308 |
Target: 5'- -gGUgACGC-UGGAGAGCAUcACGCGAc -3' miRNA: 3'- agCG-UGCGcGCUUCUCGUGaUGCGCU- -5' |
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2738 | 3' | -55.7 | NC_001491.2 | + | 84641 | 0.66 | 0.915308 |
Target: 5'- -aGCACGCGUcAGGAacgauuauguGCACcagcGCGCGAg -3' miRNA: 3'- agCGUGCGCGcUUCU----------CGUGa---UGCGCU- -5' |
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2738 | 3' | -55.7 | NC_001491.2 | + | 15772 | 0.66 | 0.908764 |
Target: 5'- gUGCAaagucCGCGCGAGGucugggugcuuguGGCugUGCGgGGa -3' miRNA: 3'- aGCGU-----GCGCGCUUC-------------UCGugAUGCgCU- -5' |
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2738 | 3' | -55.7 | NC_001491.2 | + | 123516 | 0.66 | 0.89679 |
Target: 5'- cCGCGgGCGCGcAGGuacgccgcGGCGgCUGCGUGGc -3' miRNA: 3'- aGCGUgCGCGC-UUC--------UCGU-GAUGCGCU- -5' |
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2738 | 3' | -55.7 | NC_001491.2 | + | 67233 | 0.67 | 0.890152 |
Target: 5'- cCGCGCGCGCGggGA--ACUG-GUGu -3' miRNA: 3'- aGCGUGCGCGCuuCUcgUGAUgCGCu -5' |
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2738 | 3' | -55.7 | NC_001491.2 | + | 137747 | 0.67 | 0.883287 |
Target: 5'- cCGCccgGCGgGCGgcGGGCGCc-CGCGGg -3' miRNA: 3'- aGCG---UGCgCGCuuCUCGUGauGCGCU- -5' |
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2738 | 3' | -55.7 | NC_001491.2 | + | 68737 | 0.77 | 0.371752 |
Target: 5'- cCGCGCGUgcaGCGGAGAGCGCcgACGCc- -3' miRNA: 3'- aGCGUGCG---CGCUUCUCGUGa-UGCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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