miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27380 5' -56 NC_005857.1 + 43556 0.66 0.626196
Target:  5'- aCCAGUCAcgccuuaaUGGCCAGCuuuaaUCUGAUg -3'
miRNA:   3'- cGGUCGGUaag-----ACCGGUCG-----AGACUGu -5'
27380 5' -56 NC_005857.1 + 38226 0.66 0.615022
Target:  5'- aGCU-GUCAgagCUGGCCAGaauggCUGGCAu -3'
miRNA:   3'- -CGGuCGGUaa-GACCGGUCga---GACUGU- -5'
27380 5' -56 NC_005857.1 + 39475 0.66 0.58163
Target:  5'- -gCAGCUAcgUCUuGCCAGUUCgGACAg -3'
miRNA:   3'- cgGUCGGUa-AGAcCGGUCGAGaCUGU- -5'
27380 5' -56 NC_005857.1 + 1830 0.66 0.58163
Target:  5'- cGCgAG--AUUCUGGCCAGCauUCUcGACAu -3'
miRNA:   3'- -CGgUCggUAAGACCGGUCG--AGA-CUGU- -5'
27380 5' -56 NC_005857.1 + 32398 0.67 0.55957
Target:  5'- cGCCAGCCGUUUUGuuCucGUUCUGuCAg -3'
miRNA:   3'- -CGGUCGGUAAGACcgGu-CGAGACuGU- -5'
27380 5' -56 NC_005857.1 + 9336 0.67 0.537749
Target:  5'- cGCCAGCCug-CUGGCCAuCcCgGAUAu -3'
miRNA:   3'- -CGGUCGGuaaGACCGGUcGaGaCUGU- -5'
27380 5' -56 NC_005857.1 + 17366 0.67 0.537749
Target:  5'- cGCCGGUCGUuaUCUGGCCcGUguccgGGCGa -3'
miRNA:   3'- -CGGUCGGUA--AGACCGGuCGaga--CUGU- -5'
27380 5' -56 NC_005857.1 + 51376 0.68 0.474301
Target:  5'- cGCUguAGCUAUUgUGGCCAGUcCgGGCAu -3'
miRNA:   3'- -CGG--UCGGUAAgACCGGUCGaGaCUGU- -5'
27380 5' -56 NC_005857.1 + 4991 0.7 0.368909
Target:  5'- uGCCgGGCCGUgUUGGgUAGCUUUGACu -3'
miRNA:   3'- -CGG-UCGGUAaGACCgGUCGAGACUGu -5'
27380 5' -56 NC_005857.1 + 28101 0.7 0.360154
Target:  5'- aGCCGaCCug-CUGGCCAGgUCUGgACAu -3'
miRNA:   3'- -CGGUcGGuaaGACCGGUCgAGAC-UGU- -5'
27380 5' -56 NC_005857.1 + 9246 0.71 0.310714
Target:  5'- gGUCGGCCuUUCgauauccgggaUGGCCAGCaggCUGGCGg -3'
miRNA:   3'- -CGGUCGGuAAG-----------ACCGGUCGa--GACUGU- -5'
27380 5' -56 NC_005857.1 + 39707 0.71 0.310714
Target:  5'- cGCCaacuGGCCG-UCUGGaaauCCAGCUCUGuCAg -3'
miRNA:   3'- -CGG----UCGGUaAGACC----GGUCGAGACuGU- -5'
27380 5' -56 NC_005857.1 + 19351 0.77 0.138881
Target:  5'- aCCAGUCAg---GGCCAGuCUCUGACAa -3'
miRNA:   3'- cGGUCGGUaagaCCGGUC-GAGACUGU- -5'
27380 5' -56 NC_005857.1 + 38146 1.1 0.000494
Target:  5'- uGCCAGCCAUUCUGGCCAGCUCUGACAg -3'
miRNA:   3'- -CGGUCGGUAAGACCGGUCGAGACUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.