Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27380 | 5' | -56 | NC_005857.1 | + | 1830 | 0.66 | 0.58163 |
Target: 5'- cGCgAG--AUUCUGGCCAGCauUCUcGACAu -3' miRNA: 3'- -CGgUCggUAAGACCGGUCG--AGA-CUGU- -5' |
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27380 | 5' | -56 | NC_005857.1 | + | 39475 | 0.66 | 0.58163 |
Target: 5'- -gCAGCUAcgUCUuGCCAGUUCgGACAg -3' miRNA: 3'- cgGUCGGUa-AGAcCGGUCGAGaCUGU- -5' |
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27380 | 5' | -56 | NC_005857.1 | + | 17366 | 0.67 | 0.537749 |
Target: 5'- cGCCGGUCGUuaUCUGGCCcGUguccgGGCGa -3' miRNA: 3'- -CGGUCGGUA--AGACCGGuCGaga--CUGU- -5' |
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27380 | 5' | -56 | NC_005857.1 | + | 51376 | 0.68 | 0.474301 |
Target: 5'- cGCUguAGCUAUUgUGGCCAGUcCgGGCAu -3' miRNA: 3'- -CGG--UCGGUAAgACCGGUCGaGaCUGU- -5' |
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27380 | 5' | -56 | NC_005857.1 | + | 9246 | 0.71 | 0.310714 |
Target: 5'- gGUCGGCCuUUCgauauccgggaUGGCCAGCaggCUGGCGg -3' miRNA: 3'- -CGGUCGGuAAG-----------ACCGGUCGa--GACUGU- -5' |
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27380 | 5' | -56 | NC_005857.1 | + | 19351 | 0.77 | 0.138881 |
Target: 5'- aCCAGUCAg---GGCCAGuCUCUGACAa -3' miRNA: 3'- cGGUCGGUaagaCCGGUC-GAGACUGU- -5' |
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27380 | 5' | -56 | NC_005857.1 | + | 38146 | 1.1 | 0.000494 |
Target: 5'- uGCCAGCCAUUCUGGCCAGCUCUGACAg -3' miRNA: 3'- -CGGUCGGUAAGACCGGUCGAGACUGU- -5' |
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27380 | 5' | -56 | NC_005857.1 | + | 39707 | 0.71 | 0.310714 |
Target: 5'- cGCCaacuGGCCG-UCUGGaaauCCAGCUCUGuCAg -3' miRNA: 3'- -CGG----UCGGUaAGACC----GGUCGAGACuGU- -5' |
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27380 | 5' | -56 | NC_005857.1 | + | 28101 | 0.7 | 0.360154 |
Target: 5'- aGCCGaCCug-CUGGCCAGgUCUGgACAu -3' miRNA: 3'- -CGGUcGGuaaGACCGGUCgAGAC-UGU- -5' |
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27380 | 5' | -56 | NC_005857.1 | + | 4991 | 0.7 | 0.368909 |
Target: 5'- uGCCgGGCCGUgUUGGgUAGCUUUGACu -3' miRNA: 3'- -CGG-UCGGUAaGACCgGUCGAGACUGu -5' |
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27380 | 5' | -56 | NC_005857.1 | + | 9336 | 0.67 | 0.537749 |
Target: 5'- cGCCAGCCug-CUGGCCAuCcCgGAUAu -3' miRNA: 3'- -CGGUCGGuaaGACCGGUcGaGaCUGU- -5' |
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27380 | 5' | -56 | NC_005857.1 | + | 32398 | 0.67 | 0.55957 |
Target: 5'- cGCCAGCCGUUUUGuuCucGUUCUGuCAg -3' miRNA: 3'- -CGGUCGGUAAGACcgGu-CGAGACuGU- -5' |
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27380 | 5' | -56 | NC_005857.1 | + | 38226 | 0.66 | 0.615022 |
Target: 5'- aGCU-GUCAgagCUGGCCAGaauggCUGGCAu -3' miRNA: 3'- -CGGuCGGUaa-GACCGGUCga---GACUGU- -5' |
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27380 | 5' | -56 | NC_005857.1 | + | 43556 | 0.66 | 0.626196 |
Target: 5'- aCCAGUCAcgccuuaaUGGCCAGCuuuaaUCUGAUg -3' miRNA: 3'- cGGUCGGUaag-----ACCGGUCG-----AGACUGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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