Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27384 | 3' | -53.7 | NC_005857.1 | + | 15908 | 0.67 | 0.679075 |
|
Target: 5'- uGCGGCAGGUCgaUGCgGuGGCUGCGc-- -3' miRNA: 3'- -UGUUGUCCAGa-ACGgC-UCGGCGUaug -5' |
|||||||
| 27384 | 3' | -53.7 | NC_005857.1 | + | 18333 | 0.68 | 0.6452 |
|
Target: 5'- aGCAGCuGGUC-UGCCGccugcGCCGCuuucGCg -3' miRNA: 3'- -UGUUGuCCAGaACGGCu----CGGCGua--UG- -5' |
|||||||
| 27384 | 3' | -53.7 | NC_005857.1 | + | 19612 | 0.75 | 0.254623 |
|
Target: 5'- gGCAACGGGgugauggcauucacgCUgaaaGCCgGAGCCGCAUACc -3' miRNA: 3'- -UGUUGUCCa--------------GAa---CGG-CUCGGCGUAUG- -5' |
|||||||
| 27384 | 3' | -53.7 | NC_005857.1 | + | 23238 | 0.75 | 0.254623 |
|
Target: 5'- gGCAACGGGgugauggcauucacgCUgaaaGCCgGAGCCGCAUACc -3' miRNA: 3'- -UGUUGUCCa--------------GAa---CGG-CUCGGCGUAUG- -5' |
|||||||
| 27384 | 3' | -53.7 | NC_005857.1 | + | 46268 | 1.1 | 0.000921 |
|
Target: 5'- aACAACAGGUCUUGCCGAGCCGCAUACg -3' miRNA: 3'- -UGUUGUCCAGAACGGCUCGGCGUAUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home