miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27384 5' -54.3 NC_005857.1 + 18218 0.66 0.700776
Target:  5'- cAGGAGacugccgaccgcauUGCGGacgucaaCGCGaaAGCGGCGCAGg -3'
miRNA:   3'- -UCCUU--------------AUGCC-------GUGCaaUCGCCGCGUU- -5'
27384 5' -54.3 NC_005857.1 + 23326 0.66 0.682921
Target:  5'- cGGAGUACGuGCugaGUUuuuacgcgaaGGCGGCGgCAAa -3'
miRNA:   3'- uCCUUAUGC-CGug-CAA----------UCGCCGC-GUU- -5'
27384 5' -54.3 NC_005857.1 + 19700 0.66 0.682921
Target:  5'- cGGAGUACGuGCugaGUUuuuacgcgaaGGCGGCGgCAAa -3'
miRNA:   3'- uCCUUAUGC-CGug-CAA----------UCGCCGC-GUU- -5'
27384 5' -54.3 NC_005857.1 + 24083 0.67 0.637815
Target:  5'- cAGGAgcuAUACGGCAgcgccgcaguCGUgacGaCGGCGCAGa -3'
miRNA:   3'- -UCCU---UAUGCCGU----------GCAau-C-GCCGCGUU- -5'
27384 5' -54.3 NC_005857.1 + 20457 0.67 0.637815
Target:  5'- cAGGAgcuAUACGGCAgcgccgcaguCGUgacGaCGGCGCAGa -3'
miRNA:   3'- -UCCU---UAUGCCGU----------GCAau-C-GCCGCGUU- -5'
27384 5' -54.3 NC_005857.1 + 7795 0.68 0.603888
Target:  5'- cAGGAGUuCGGCACGguuaAGCaGGuUGCAGa -3'
miRNA:   3'- -UCCUUAuGCCGUGCaa--UCG-CC-GCGUU- -5'
27384 5' -54.3 NC_005857.1 + 15175 0.68 0.592616
Target:  5'- uAGGGcuucuuUACGGCaaacgGCGgauUGGUGGCGCGAu -3'
miRNA:   3'- -UCCUu-----AUGCCG-----UGCa--AUCGCCGCGUU- -5'
27384 5' -54.3 NC_005857.1 + 47794 0.7 0.483238
Target:  5'- gGGGaAGUACGGCACGc-AGCuGCGCc- -3'
miRNA:   3'- -UCC-UUAUGCCGUGCaaUCGcCGCGuu -5'
27384 5' -54.3 NC_005857.1 + 8013 0.71 0.432232
Target:  5'- gGGGAAaccCGGCgacGCGcUGGCGGCGCu- -3'
miRNA:   3'- -UCCUUau-GCCG---UGCaAUCGCCGCGuu -5'
27384 5' -54.3 NC_005857.1 + 12218 0.71 0.422411
Target:  5'- uGGGggUAC-GCGCGgucGGgGGCGCAc -3'
miRNA:   3'- -UCCuuAUGcCGUGCaa-UCgCCGCGUu -5'
27384 5' -54.3 NC_005857.1 + 46305 1.06 0.001492
Target:  5'- gAGGAAUACGGCACGUUAGCGGCGCAAu -3'
miRNA:   3'- -UCCUUAUGCCGUGCAAUCGCCGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.