Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27385 | 3' | -58 | NC_005857.1 | + | 39317 | 0.66 | 0.521075 |
Target: 5'- uUGAGGUCCGCaCUGCUUACaaGcuaAAGAg -3' miRNA: 3'- -ACUCCGGGCGcGGCGAAUGacC---UUCU- -5' |
|||||||
27385 | 3' | -58 | NC_005857.1 | + | 12176 | 0.66 | 0.503367 |
Target: 5'- cUGAGGCCauuaugccgcugacgCGUGCCggugacgGCUcGCUGGggGu -3' miRNA: 3'- -ACUCCGG---------------GCGCGG-------CGAaUGACCuuCu -5' |
|||||||
27385 | 3' | -58 | NC_005857.1 | + | 14157 | 0.67 | 0.487964 |
Target: 5'- --uGGCCaccucagccagcgCGUGCCGUauggcggUUACUGGAAGGa -3' miRNA: 3'- acuCCGG-------------GCGCGGCG-------AAUGACCUUCU- -5' |
|||||||
27385 | 3' | -58 | NC_005857.1 | + | 50050 | 0.68 | 0.393524 |
Target: 5'- cUGAuGGCgCUGUGCCGUUUcgGCUGGcAGGu -3' miRNA: 3'- -ACU-CCG-GGCGCGGCGAA--UGACCuUCU- -5' |
|||||||
27385 | 3' | -58 | NC_005857.1 | + | 47402 | 1.09 | 0.00046 |
Target: 5'- gUGAGGCCCGCGCCGCUUACUGGAAGAa -3' miRNA: 3'- -ACUCCGGGCGCGGCGAAUGACCUUCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home