miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27385 5' -57.4 NC_005857.1 + 49486 0.66 0.554242
Target:  5'- cGCAcCCUCGGUggcggcauGGGCGuuuggagcGGGCugGCa -3'
miRNA:   3'- uUGU-GGAGCCG--------UCCGUu-------UCCGugCGg -5'
27385 5' -57.4 NC_005857.1 + 989 0.66 0.543438
Target:  5'- -uCACCcCaGCAGGCAGAuGGC-CaGCCg -3'
miRNA:   3'- uuGUGGaGcCGUCCGUUU-CCGuG-CGG- -5'
27385 5' -57.4 NC_005857.1 + 42102 0.66 0.522047
Target:  5'- uGCAUCUgGGCuGGCGGuGGGUuuguaAUGCCa -3'
miRNA:   3'- uUGUGGAgCCGuCCGUU-UCCG-----UGCGG- -5'
27385 5' -57.4 NC_005857.1 + 50046 0.66 0.511474
Target:  5'- uGGCGCUgugccguuUCGGCuGGCAGGuGCuCGCCu -3'
miRNA:   3'- -UUGUGG--------AGCCGuCCGUUUcCGuGCGG- -5'
27385 5' -57.4 NC_005857.1 + 31440 0.67 0.500991
Target:  5'- --gACCUUGGCucagAGGUggaGAAGGUGCuGCCa -3'
miRNA:   3'- uugUGGAGCCG----UCCG---UUUCCGUG-CGG- -5'
27385 5' -57.4 NC_005857.1 + 23994 0.68 0.420985
Target:  5'- -uCACCUCGcuguCAGGCAGuaucaGCACGCUg -3'
miRNA:   3'- uuGUGGAGCc---GUCCGUUuc---CGUGCGG- -5'
27385 5' -57.4 NC_005857.1 + 20368 0.68 0.420985
Target:  5'- -uCACCUCGcuguCAGGCAGuaucaGCACGCUg -3'
miRNA:   3'- uuGUGGAGCc---GUCCGUUuc---CGUGCGG- -5'
27385 5' -57.4 NC_005857.1 + 30199 0.69 0.383975
Target:  5'- gAGCAUgauuucaaucaUUCGGCGaccagauagcgcGGCAAGGGCgaACGCCa -3'
miRNA:   3'- -UUGUG-----------GAGCCGU------------CCGUUUCCG--UGCGG- -5'
27385 5' -57.4 NC_005857.1 + 32649 0.69 0.383078
Target:  5'- cACGCCagaauaugguggcUCaGGCAgGGCAGcuuucGGGCugGCCg -3'
miRNA:   3'- uUGUGG-------------AG-CCGU-CCGUU-----UCCGugCGG- -5'
27385 5' -57.4 NC_005857.1 + 1091 0.69 0.366297
Target:  5'- cGCGCCUaUGGCGGGUAAAccaggugacGGCGauaGCCc -3'
miRNA:   3'- uUGUGGA-GCCGUCCGUUU---------CCGUg--CGG- -5'
27385 5' -57.4 NC_005857.1 + 23677 0.69 0.357671
Target:  5'- uGACAUCcCGGguGGauucagcaGAGGGUACGCUg -3'
miRNA:   3'- -UUGUGGaGCCguCCg-------UUUCCGUGCGG- -5'
27385 5' -57.4 NC_005857.1 + 20050 0.69 0.357671
Target:  5'- uGACAUCcCGGguGGauucagcaGAGGGUACGCUg -3'
miRNA:   3'- -UUGUGGaGCCguCCg-------UUUCCGUGCGG- -5'
27385 5' -57.4 NC_005857.1 + 40918 0.69 0.349188
Target:  5'- uGCACCaUCaGGCGGGCAucaaaacugGAGuucCACGCCa -3'
miRNA:   3'- uUGUGG-AG-CCGUCCGU---------UUCc--GUGCGG- -5'
27385 5' -57.4 NC_005857.1 + 9032 0.71 0.265457
Target:  5'- aAAUACCUUGuuuCAGGaaguAGGCGCGCCa -3'
miRNA:   3'- -UUGUGGAGCc--GUCCguu-UCCGUGCGG- -5'
27385 5' -57.4 NC_005857.1 + 49677 0.73 0.209125
Target:  5'- cGAUACCUUGGCGucggcaguucuGGCAAAGGUauuugucACGCUg -3'
miRNA:   3'- -UUGUGGAGCCGU-----------CCGUUUCCG-------UGCGG- -5'
27385 5' -57.4 NC_005857.1 + 20828 0.74 0.188312
Target:  5'- cACACg-CGGUgcgacGGGCAgcGGCACGCCg -3'
miRNA:   3'- uUGUGgaGCCG-----UCCGUuuCCGUGCGG- -5'
27385 5' -57.4 NC_005857.1 + 47436 1.1 0.000399
Target:  5'- cAACACCUCGGCAGGCAAAGGCACGCCg -3'
miRNA:   3'- -UUGUGGAGCCGUCCGUUUCCGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.