miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27386 5' -58 NC_005857.1 + 22827 0.66 0.539404
Target:  5'- -cCAGCAGGGCAGCACGcucaccaguaucGGAaaCaGGa -3'
miRNA:   3'- uaGUCGUUCCGUCGUGC------------CCUacGcCC- -5'
27386 5' -58 NC_005857.1 + 49271 0.66 0.528766
Target:  5'- cAUCAGCAuu-CAGCuuaAUGGucGAUGCGGGg -3'
miRNA:   3'- -UAGUCGUuccGUCG---UGCC--CUACGCCC- -5'
27386 5' -58 NC_005857.1 + 11999 0.66 0.504607
Target:  5'- --gAGCugcuucuGGCAGUACGGGAacggccauucagaaUGCaGGGa -3'
miRNA:   3'- uagUCGuu-----CCGUCGUGCCCU--------------ACG-CCC- -5'
27386 5' -58 NC_005857.1 + 32631 0.68 0.381528
Target:  5'- cUCAgGCAGGGCAGCuuuCGGGcugGCcGGu -3'
miRNA:   3'- uAGU-CGUUCCGUCGu--GCCCua-CGcCC- -5'
27386 5' -58 NC_005857.1 + 49480 0.68 0.381528
Target:  5'- cUCGGU--GGCGGCAUGGGcguuuggaGCGGGc -3'
miRNA:   3'- uAGUCGuuCCGUCGUGCCCua------CGCCC- -5'
27386 5' -58 NC_005857.1 + 20738 0.69 0.355503
Target:  5'- --uGGUcuGGGCgAGCGCGGGAaGUGGGu -3'
miRNA:   3'- uagUCGu-UCCG-UCGUGCCCUaCGCCC- -5'
27386 5' -58 NC_005857.1 + 24364 0.69 0.355503
Target:  5'- --uGGUcuGGGCgAGCGCGGGAaGUGGGu -3'
miRNA:   3'- uagUCGu-UCCG-UCGUGCCCUaCGCCC- -5'
27386 5' -58 NC_005857.1 + 11235 0.71 0.271068
Target:  5'- uUCAGgAgaAGGaCAGCAacaGGGAgcUGCGGGa -3'
miRNA:   3'- uAGUCgU--UCC-GUCGUg--CCCU--ACGCCC- -5'
27386 5' -58 NC_005857.1 + 21514 0.72 0.226224
Target:  5'- gGUCAGUcuGGCGGCACGGG-UGCc-- -3'
miRNA:   3'- -UAGUCGuuCCGUCGUGCCCuACGccc -5'
27386 5' -58 NC_005857.1 + 49666 0.73 0.191395
Target:  5'- cGUCGGCAGuucuGGCAaagguauuugucacGCugGaGGAUGCGGGc -3'
miRNA:   3'- -UAGUCGUU----CCGU--------------CGugC-CCUACGCCC- -5'
27386 5' -58 NC_005857.1 + 47833 1.09 0.00044
Target:  5'- uAUCAGCAAGGCAGCACGGGAUGCGGGg -3'
miRNA:   3'- -UAGUCGUUCCGUCGUGCCCUACGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.