miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27388 3' -53.7 NC_005857.1 + 49475 0.66 0.752342
Target:  5'- -uGGCgGCAugGGCGuuuGGAGCgGGCugGCa -3'
miRNA:   3'- agUUGgCGUugUCGU---UCUCGgUCG--CG- -5'
27388 3' -53.7 NC_005857.1 + 17575 0.79 0.141705
Target:  5'- uUCAGCUGCAcgccauGCAGCAGGgaagugguGGUCAGCGCc -3'
miRNA:   3'- -AGUUGGCGU------UGUCGUUC--------UCGGUCGCG- -5'
27388 3' -53.7 NC_005857.1 + 37933 0.76 0.227104
Target:  5'- gCGACCGUGgucgcACAGCcugcugAAGAGCUGGCGCg -3'
miRNA:   3'- aGUUGGCGU-----UGUCG------UUCUCGGUCGCG- -5'
27388 3' -53.7 NC_005857.1 + 37577 0.72 0.415409
Target:  5'- aUCGACCaGC-GCGGCGGGAaauuccaGaCCAGCGCc -3'
miRNA:   3'- -AGUUGG-CGuUGUCGUUCU-------C-GGUCGCG- -5'
27388 3' -53.7 NC_005857.1 + 30370 0.71 0.435954
Target:  5'- aUCAAaauCCGCAGCAGCGGG-GCaugAGCGa -3'
miRNA:   3'- -AGUU---GGCGUUGUCGUUCuCGg--UCGCg -5'
27388 3' -53.7 NC_005857.1 + 22575 0.71 0.456055
Target:  5'- aUCuGCCGUAcccGCAccGCAGGAGaCCAGgGCu -3'
miRNA:   3'- -AGuUGGCGU---UGU--CGUUCUC-GGUCgCG- -5'
27388 3' -53.7 NC_005857.1 + 28621 0.71 0.46629
Target:  5'- aUCAGCCGCgGACAagagaugacGCAAGccauuGCCAuaGCGCa -3'
miRNA:   3'- -AGUUGGCG-UUGU---------CGUUCu----CGGU--CGCG- -5'
27388 3' -53.7 NC_005857.1 + 8106 0.7 0.540931
Target:  5'- aUCaAGCgGCuuCAGCGcc-GCCAGCGCg -3'
miRNA:   3'- -AG-UUGgCGuuGUCGUucuCGGUCGCG- -5'
27388 3' -53.7 NC_005857.1 + 35610 0.67 0.68675
Target:  5'- -aAGCCGCcGCGcuCGAGGcGUCGGCGCg -3'
miRNA:   3'- agUUGGCGuUGUc-GUUCU-CGGUCGCG- -5'
27388 3' -53.7 NC_005857.1 + 30178 0.67 0.68675
Target:  5'- gCGACCagauaGC-GCGGCAAGGgcgaacGCCAGCGg -3'
miRNA:   3'- aGUUGG-----CGuUGUCGUUCU------CGGUCGCg -5'
27388 3' -53.7 NC_005857.1 + 36435 0.67 0.708965
Target:  5'- uUCGAUgaaGCAACA-CAGGGGCUAcGUGCa -3'
miRNA:   3'- -AGUUGg--CGUUGUcGUUCUCGGU-CGCG- -5'
27388 3' -53.7 NC_005857.1 + 3571 0.67 0.708965
Target:  5'- gUUAACCGaCAAcCAGCcccacuGGcGGCCaAGCGCa -3'
miRNA:   3'- -AGUUGGC-GUU-GUCGu-----UC-UCGG-UCGCG- -5'
27388 3' -53.7 NC_005857.1 + 31443 0.67 0.71996
Target:  5'- aUCGACCuuGGCucagAGguGGAgaaggugcuGCCAGCGCa -3'
miRNA:   3'- -AGUUGGcgUUG----UCguUCU---------CGGUCGCG- -5'
27388 3' -53.7 NC_005857.1 + 26778 0.66 0.730862
Target:  5'- cUCGacGCCGC-ACAGCAGcuGCU-GCGCa -3'
miRNA:   3'- -AGU--UGGCGuUGUCGUUcuCGGuCGCG- -5'
27388 3' -53.7 NC_005857.1 + 9727 0.7 0.48711
Target:  5'- ---gUCGCAGCAGCGcaGGCUGGCGUc -3'
miRNA:   3'- aguuGGCGUUGUCGUucUCGGUCGCG- -5'
27388 3' -53.7 NC_005857.1 + 42384 0.71 0.467321
Target:  5'- aCAGCCGCAuuCAGCAgacuauuuuGGAGCaauuccugacgguagAGCGCg -3'
miRNA:   3'- aGUUGGCGUu-GUCGU---------UCUCGg--------------UCGCG- -5'
27388 3' -53.7 NC_005857.1 + 15332 0.72 0.406787
Target:  5'- aUCAAagggCGCAaaggugGCAGCucaAGCCAGCGCa -3'
miRNA:   3'- -AGUUg---GCGU------UGUCGuucUCGGUCGCG- -5'
27388 3' -53.7 NC_005857.1 + 24113 0.77 0.208803
Target:  5'- aCGACgGCGcagaaauuuaacgGCAGCAGGAGCCuGCGg -3'
miRNA:   3'- aGUUGgCGU-------------UGUCGUUCUCGGuCGCg -5'
27388 3' -53.7 NC_005857.1 + 20487 0.77 0.208803
Target:  5'- aCGACgGCGcagaaauuuaaugGCAGCAGGAGCCuGCGg -3'
miRNA:   3'- aGUUGgCGU-------------UGUCGUUCUCGGuCGCg -5'
27388 3' -53.7 NC_005857.1 + 38923 0.66 0.773306
Target:  5'- gCAugCGCA--GGCAuuuuGCCAGgGCa -3'
miRNA:   3'- aGUugGCGUugUCGUucu-CGGUCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.