Results 21 - 37 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27388 | 3' | -53.7 | NC_005857.1 | + | 26697 | 0.7 | 0.540931 |
Target: 5'- uUCAugCGCAGCAGCugcuGUgCGGCGUc -3' miRNA: 3'- -AGUugGCGUUGUCGuucuCG-GUCGCG- -5' |
|||||||
27388 | 3' | -53.7 | NC_005857.1 | + | 8106 | 0.7 | 0.540931 |
Target: 5'- aUCaAGCgGCuuCAGCGcc-GCCAGCGCg -3' miRNA: 3'- -AG-UUGgCGuuGUCGUucuCGGUCGCG- -5' |
|||||||
27388 | 3' | -53.7 | NC_005857.1 | + | 18825 | 0.7 | 0.52999 |
Target: 5'- gUCGACCG--ACGcCGGGAGCCAGCa- -3' miRNA: 3'- -AGUUGGCguUGUcGUUCUCGGUCGcg -5' |
|||||||
27388 | 3' | -53.7 | NC_005857.1 | + | 50537 | 0.7 | 0.51913 |
Target: 5'- -aGACCGCAGCAGCcgAAGGG-UGGCGa -3' miRNA: 3'- agUUGGCGUUGUCG--UUCUCgGUCGCg -5' |
|||||||
27388 | 3' | -53.7 | NC_005857.1 | + | 8633 | 0.7 | 0.51913 |
Target: 5'- -aAACCGCAAaAGCu--GGCgCAGCGCg -3' miRNA: 3'- agUUGGCGUUgUCGuucUCG-GUCGCG- -5' |
|||||||
27388 | 3' | -53.7 | NC_005857.1 | + | 9727 | 0.7 | 0.48711 |
Target: 5'- ---gUCGCAGCAGCGcaGGCUGGCGUc -3' miRNA: 3'- aguuGGCGUUGUCGUucUCGGUCGCG- -5' |
|||||||
27388 | 3' | -53.7 | NC_005857.1 | + | 42384 | 0.71 | 0.467321 |
Target: 5'- aCAGCCGCAuuCAGCAgacuauuuuGGAGCaauuccugacgguagAGCGCg -3' miRNA: 3'- aGUUGGCGUu-GUCGU---------UCUCGg--------------UCGCG- -5' |
|||||||
27388 | 3' | -53.7 | NC_005857.1 | + | 28621 | 0.71 | 0.46629 |
Target: 5'- aUCAGCCGCgGACAagagaugacGCAAGccauuGCCAuaGCGCa -3' miRNA: 3'- -AGUUGGCG-UUGU---------CGUUCu----CGGU--CGCG- -5' |
|||||||
27388 | 3' | -53.7 | NC_005857.1 | + | 22575 | 0.71 | 0.456055 |
Target: 5'- aUCuGCCGUAcccGCAccGCAGGAGaCCAGgGCu -3' miRNA: 3'- -AGuUGGCGU---UGU--CGUUCUC-GGUCgCG- -5' |
|||||||
27388 | 3' | -53.7 | NC_005857.1 | + | 30370 | 0.71 | 0.435954 |
Target: 5'- aUCAAaauCCGCAGCAGCGGG-GCaugAGCGa -3' miRNA: 3'- -AGUU---GGCGUUGUCGUUCuCGg--UCGCg -5' |
|||||||
27388 | 3' | -53.7 | NC_005857.1 | + | 37577 | 0.72 | 0.415409 |
Target: 5'- aUCGACCaGC-GCGGCGGGAaauuccaGaCCAGCGCc -3' miRNA: 3'- -AGUUGG-CGuUGUCGUUCU-------C-GGUCGCG- -5' |
|||||||
27388 | 3' | -53.7 | NC_005857.1 | + | 15332 | 0.72 | 0.406787 |
Target: 5'- aUCAAagggCGCAaaggugGCAGCucaAGCCAGCGCa -3' miRNA: 3'- -AGUUg---GCGU------UGUCGuucUCGGUCGCG- -5' |
|||||||
27388 | 3' | -53.7 | NC_005857.1 | + | 37933 | 0.76 | 0.227104 |
Target: 5'- gCGACCGUGgucgcACAGCcugcugAAGAGCUGGCGCg -3' miRNA: 3'- aGUUGGCGU-----UGUCG------UUCUCGGUCGCG- -5' |
|||||||
27388 | 3' | -53.7 | NC_005857.1 | + | 24113 | 0.77 | 0.208803 |
Target: 5'- aCGACgGCGcagaaauuuaacgGCAGCAGGAGCCuGCGg -3' miRNA: 3'- aGUUGgCGU-------------UGUCGUUCUCGGuCGCg -5' |
|||||||
27388 | 3' | -53.7 | NC_005857.1 | + | 20487 | 0.77 | 0.208803 |
Target: 5'- aCGACgGCGcagaaauuuaaugGCAGCAGGAGCCuGCGg -3' miRNA: 3'- aGUUGgCGU-------------UGUCGUUCUCGGuCGCg -5' |
|||||||
27388 | 3' | -53.7 | NC_005857.1 | + | 17575 | 0.79 | 0.141705 |
Target: 5'- uUCAGCUGCAcgccauGCAGCAGGgaagugguGGUCAGCGCc -3' miRNA: 3'- -AGUUGGCGU------UGUCGUUC--------UCGGUCGCG- -5' |
|||||||
27388 | 3' | -53.7 | NC_005857.1 | + | 49923 | 1.13 | 0.000588 |
Target: 5'- cUCAACCGCAACAGCAAGAGCCAGCGCa -3' miRNA: 3'- -AGUUGGCGUUGUCGUUCUCGGUCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home