miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27388 5' -56.6 NC_005857.1 + 47514 0.66 0.589496
Target:  5'- --cGGCGuGCcUUUGCCuGCCGAggUg -3'
miRNA:   3'- cuuCCGCuCGuGGACGGuCGGCUuuG- -5'
27388 5' -56.6 NC_005857.1 + 34513 0.66 0.588389
Target:  5'- cGGAGGCcuGGGCggagaacGCgCUGCCAGCaacCGAAAUg -3'
miRNA:   3'- -CUUCCG--CUCG-------UG-GACGGUCG---GCUUUG- -5'
27388 5' -56.6 NC_005857.1 + 19405 0.66 0.56743
Target:  5'- --uGGUGAGCuuaucucCCUGCUGGCUGAcaguaGACu -3'
miRNA:   3'- cuuCCGCUCGu------GGACGGUCGGCU-----UUG- -5'
27388 5' -56.6 NC_005857.1 + 48781 0.66 0.556474
Target:  5'- ---uGCGAG-ACCggggGCUAGCUGAAACu -3'
miRNA:   3'- cuucCGCUCgUGGa---CGGUCGGCUUUG- -5'
27388 5' -56.6 NC_005857.1 + 26845 0.66 0.545579
Target:  5'- --uGGCGAGCuAUCUGCgCGcGCCGGucACg -3'
miRNA:   3'- cuuCCGCUCG-UGGACG-GU-CGGCUu-UG- -5'
27388 5' -56.6 NC_005857.1 + 25171 0.67 0.51334
Target:  5'- --uGGUGAcGCGCCaGCC-GCUGGAGCc -3'
miRNA:   3'- cuuCCGCU-CGUGGaCGGuCGGCUUUG- -5'
27388 5' -56.6 NC_005857.1 + 36801 0.68 0.48191
Target:  5'- --cGGCGcGGCAUUUGCgauuCAGCCGAcGCg -3'
miRNA:   3'- cuuCCGC-UCGUGGACG----GUCGGCUuUG- -5'
27388 5' -56.6 NC_005857.1 + 37519 0.68 0.461482
Target:  5'- --uGGuCGA-UACgCUGCCAGCCGAGAa -3'
miRNA:   3'- cuuCC-GCUcGUG-GACGGUCGGCUUUg -5'
27388 5' -56.6 NC_005857.1 + 9425 0.69 0.411575
Target:  5'- uGGGGCGAacgacagaguacaGCGCCaGCCaggcAGCUGAGGCg -3'
miRNA:   3'- cUUCCGCU-------------CGUGGaCGG----UCGGCUUUG- -5'
27388 5' -56.6 NC_005857.1 + 36109 0.7 0.332988
Target:  5'- --uGGCGAGCGCaucaUGCUGGCCacuGACa -3'
miRNA:   3'- cuuCCGCUCGUGg---ACGGUCGGcu-UUG- -5'
27388 5' -56.6 NC_005857.1 + 41098 0.7 0.332988
Target:  5'- --uGGCGAGCAgCUGCUguGGCC-AGGCu -3'
miRNA:   3'- cuuCCGCUCGUgGACGG--UCGGcUUUG- -5'
27388 5' -56.6 NC_005857.1 + 49957 1.1 0.000443
Target:  5'- cGAAGGCGAGCACCUGCCAGCCGAAACg -3'
miRNA:   3'- -CUUCCGCUCGUGGACGGUCGGCUUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.