miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2739 3' -54.8 NC_001491.2 + 39323 0.66 0.936438
Target:  5'- gGACGUGGcCUGGUcuacCGCGGCGCu- -3'
miRNA:   3'- aUUGUACCuGGUCGua--GUGCCGCGcg -5'
2739 3' -54.8 NC_001491.2 + 138071 0.66 0.931352
Target:  5'- cGAgGUGGGgCggguuGGCAUUGCGGCG-GCg -3'
miRNA:   3'- aUUgUACCUgG-----UCGUAGUGCCGCgCG- -5'
2739 3' -54.8 NC_001491.2 + 117617 0.66 0.924369
Target:  5'- -----aGGACCAGCGUCcgaaaucggcucugGCGGgaGCGUc -3'
miRNA:   3'- auuguaCCUGGUCGUAG--------------UGCCg-CGCG- -5'
2739 3' -54.8 NC_001491.2 + 19606 0.66 0.914607
Target:  5'- aAGCugccGGGCCGGCAUCGCcuaaaCGUGCc -3'
miRNA:   3'- aUUGua--CCUGGUCGUAGUGcc---GCGCG- -5'
2739 3' -54.8 NC_001491.2 + 82657 0.66 0.91281
Target:  5'- -cGCGcUGGGCCugGGCGUUugGGgugagagccugcacCGCGCg -3'
miRNA:   3'- auUGU-ACCUGG--UCGUAGugCC--------------GCGCG- -5'
2739 3' -54.8 NC_001491.2 + 77687 0.66 0.908531
Target:  5'- cUAAC-UGGcCUAGCGcuaAUGGCGCGUg -3'
miRNA:   3'- -AUUGuACCuGGUCGUag-UGCCGCGCG- -5'
2739 3' -54.8 NC_001491.2 + 146375 0.67 0.902211
Target:  5'- gGGCcgGGuaGCCGGC--CACGGCG-GCg -3'
miRNA:   3'- aUUGuaCC--UGGUCGuaGUGCCGCgCG- -5'
2739 3' -54.8 NC_001491.2 + 78436 0.67 0.902211
Target:  5'- gAGCucUGaGACCAGC---ACGGCGCGa -3'
miRNA:   3'- aUUGu-AC-CUGGUCGuagUGCCGCGCg -5'
2739 3' -54.8 NC_001491.2 + 146841 0.67 0.895649
Target:  5'- -----cGGGCCAcCAccagaACGGCGCGCa -3'
miRNA:   3'- auuguaCCUGGUcGUag---UGCCGCGCG- -5'
2739 3' -54.8 NC_001491.2 + 41691 0.67 0.888849
Target:  5'- --cCAUGGAaacaUCAGC-UCGCGGaacgGCGCg -3'
miRNA:   3'- auuGUACCU----GGUCGuAGUGCCg---CGCG- -5'
2739 3' -54.8 NC_001491.2 + 61964 0.67 0.888849
Target:  5'- cGACgGUGGAuCCGGUAg-GCGGUGgGCa -3'
miRNA:   3'- aUUG-UACCU-GGUCGUagUGCCGCgCG- -5'
2739 3' -54.8 NC_001491.2 + 1628 0.67 0.883949
Target:  5'- aGGCAUGGACCuucgcgaggaugaugAGC-UCagagagacgcucgACGGgGCGCa -3'
miRNA:   3'- aUUGUACCUGG---------------UCGuAG-------------UGCCgCGCG- -5'
2739 3' -54.8 NC_001491.2 + 58133 0.67 0.874549
Target:  5'- cAACAgacGcGCCGGCAUCugGuuGCGCu -3'
miRNA:   3'- aUUGUa--CcUGGUCGUAGugCcgCGCG- -5'
2739 3' -54.8 NC_001491.2 + 97388 0.67 0.873069
Target:  5'- gAGCcagGGGCCAGCAcccaggcacagcCGCGGUcuGCGCg -3'
miRNA:   3'- aUUGua-CCUGGUCGUa-----------GUGCCG--CGCG- -5'
2739 3' -54.8 NC_001491.2 + 116410 0.68 0.851429
Target:  5'- -cGCcUGGGCUccgacgAGCugcgccUCGCGGUGCGCg -3'
miRNA:   3'- auUGuACCUGG------UCGu-----AGUGCCGCGCG- -5'
2739 3' -54.8 NC_001491.2 + 115607 0.68 0.843301
Target:  5'- -----cGGcCCAGCGaCGCGGCuuGCGCg -3'
miRNA:   3'- auuguaCCuGGUCGUaGUGCCG--CGCG- -5'
2739 3' -54.8 NC_001491.2 + 30883 0.68 0.843301
Target:  5'- ---gAUGGAggaaCCGGC--UAUGGCGCGCg -3'
miRNA:   3'- auugUACCU----GGUCGuaGUGCCGCGCG- -5'
2739 3' -54.8 NC_001491.2 + 13327 0.68 0.826456
Target:  5'- -cGCGU-GugCGGCAgccacgcgacUCACGGCcGCGCa -3'
miRNA:   3'- auUGUAcCugGUCGU----------AGUGCCG-CGCG- -5'
2739 3' -54.8 NC_001491.2 + 83443 0.68 0.826456
Target:  5'- -cGCA-GGAgCUAGUAUCaaauACGGUGCGCc -3'
miRNA:   3'- auUGUaCCU-GGUCGUAG----UGCCGCGCG- -5'
2739 3' -54.8 NC_001491.2 + 24043 0.69 0.808879
Target:  5'- ---aGUGGcaGCCAGUGUCugGGuCGCGg -3'
miRNA:   3'- auugUACC--UGGUCGUAGugCC-GCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.