Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
2739 | 3' | -54.8 | NC_001491.2 | + | 148272 | 0.77 | 0.362066 |
Target: 5'- --cCcgGGGCCAGCG-CACGGCGCagGCg -3' miRNA: 3'- auuGuaCCUGGUCGUaGUGCCGCG--CG- -5' |
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2739 | 3' | -54.8 | NC_001491.2 | + | 144937 | 0.75 | 0.449404 |
Target: 5'- ---aGUGGACCaucuucAGCAUCGCGGCGaGCc -3' miRNA: 3'- auugUACCUGG------UCGUAGUGCCGCgCG- -5' |
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2739 | 3' | -54.8 | NC_001491.2 | + | 2713 | 0.74 | 0.51696 |
Target: 5'- aAGCAUGGAuCCAGCGUgGaggaGGCGCa- -3' miRNA: 3'- aUUGUACCU-GGUCGUAgUg---CCGCGcg -5' |
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2739 | 3' | -54.8 | NC_001491.2 | + | 137687 | 0.74 | 0.526956 |
Target: 5'- --cCGUGGACCgAGCGggCGCGggaGCGCGCg -3' miRNA: 3'- auuGUACCUGG-UCGUa-GUGC---CGCGCG- -5' |
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2739 | 3' | -54.8 | NC_001491.2 | + | 35833 | 0.72 | 0.650651 |
Target: 5'- cAACGUcGGCCcGCAgguCGGCGCGCa -3' miRNA: 3'- aUUGUAcCUGGuCGUaguGCCGCGCG- -5' |
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2739 | 3' | -54.8 | NC_001491.2 | + | 137709 | 0.72 | 0.619393 |
Target: 5'- -----cGGGgCGGCGUCGCGGCG-GCg -3' miRNA: 3'- auuguaCCUgGUCGUAGUGCCGCgCG- -5' |
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2739 | 3' | -54.8 | NC_001491.2 | + | 142574 | 0.71 | 0.712507 |
Target: 5'- aUAGCAUGG-CUGG-GUUACGGUGUGCg -3' miRNA: 3'- -AUUGUACCuGGUCgUAGUGCCGCGCG- -5' |
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2739 | 3' | -54.8 | NC_001491.2 | + | 111185 | 0.7 | 0.771802 |
Target: 5'- -----aGGACCAGCuaguCGGCGCaGCg -3' miRNA: 3'- auuguaCCUGGUCGuaguGCCGCG-CG- -5' |
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2739 | 3' | -54.8 | NC_001491.2 | + | 147284 | 0.7 | 0.73266 |
Target: 5'- cUGAgGUGGGCCGGgGagGCGGC-CGCc -3' miRNA: 3'- -AUUgUACCUGGUCgUagUGCCGcGCG- -5' |
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2739 | 3' | -54.8 | NC_001491.2 | + | 116362 | 0.7 | 0.762186 |
Target: 5'- gUGGCccGGACCguGGCGcCGCuGGUGCGCu -3' miRNA: 3'- -AUUGuaCCUGG--UCGUaGUG-CCGCGCG- -5' |
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2739 | 3' | -54.8 | NC_001491.2 | + | 19173 | 0.69 | 0.781289 |
Target: 5'- gAGCGU-GACCAGCucCACGGCG-GCc -3' miRNA: 3'- aUUGUAcCUGGUCGuaGUGCCGCgCG- -5' |
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2739 | 3' | -54.8 | NC_001491.2 | + | 24043 | 0.69 | 0.808879 |
Target: 5'- ---aGUGGcaGCCAGUGUCugGGuCGCGg -3' miRNA: 3'- auugUACC--UGGUCGUAGugCC-GCGCg -5' |
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2739 | 3' | -54.8 | NC_001491.2 | + | 83443 | 0.68 | 0.826456 |
Target: 5'- -cGCA-GGAgCUAGUAUCaaauACGGUGCGCc -3' miRNA: 3'- auUGUaCCU-GGUCGUAG----UGCCGCGCG- -5' |
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2739 | 3' | -54.8 | NC_001491.2 | + | 13327 | 0.68 | 0.826456 |
Target: 5'- -cGCGU-GugCGGCAgccacgcgacUCACGGCcGCGCa -3' miRNA: 3'- auUGUAcCugGUCGU----------AGUGCCG-CGCG- -5' |
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2739 | 3' | -54.8 | NC_001491.2 | + | 115607 | 0.68 | 0.843301 |
Target: 5'- -----cGGcCCAGCGaCGCGGCuuGCGCg -3' miRNA: 3'- auuguaCCuGGUCGUaGUGCCG--CGCG- -5' |
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2739 | 3' | -54.8 | NC_001491.2 | + | 30883 | 0.68 | 0.843301 |
Target: 5'- ---gAUGGAggaaCCGGC--UAUGGCGCGCg -3' miRNA: 3'- auugUACCU----GGUCGuaGUGCCGCGCG- -5' |
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2739 | 3' | -54.8 | NC_001491.2 | + | 116410 | 0.68 | 0.851429 |
Target: 5'- -cGCcUGGGCUccgacgAGCugcgccUCGCGGUGCGCg -3' miRNA: 3'- auUGuACCUGG------UCGu-----AGUGCCGCGCG- -5' |
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2739 | 3' | -54.8 | NC_001491.2 | + | 97388 | 0.67 | 0.873069 |
Target: 5'- gAGCcagGGGCCAGCAcccaggcacagcCGCGGUcuGCGCg -3' miRNA: 3'- aUUGua-CCUGGUCGUa-----------GUGCCG--CGCG- -5' |
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2739 | 3' | -54.8 | NC_001491.2 | + | 58133 | 0.67 | 0.874549 |
Target: 5'- cAACAgacGcGCCGGCAUCugGuuGCGCu -3' miRNA: 3'- aUUGUa--CcUGGUCGUAGugCcgCGCG- -5' |
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2739 | 3' | -54.8 | NC_001491.2 | + | 1628 | 0.67 | 0.883949 |
Target: 5'- aGGCAUGGACCuucgcgaggaugaugAGC-UCagagagacgcucgACGGgGCGCa -3' miRNA: 3'- aUUGUACCUGG---------------UCGuAG-------------UGCCgCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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