miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2739 3' -54.8 NC_001491.2 + 148272 0.77 0.362066
Target:  5'- --cCcgGGGCCAGCG-CACGGCGCagGCg -3'
miRNA:   3'- auuGuaCCUGGUCGUaGUGCCGCG--CG- -5'
2739 3' -54.8 NC_001491.2 + 144937 0.75 0.449404
Target:  5'- ---aGUGGACCaucuucAGCAUCGCGGCGaGCc -3'
miRNA:   3'- auugUACCUGG------UCGUAGUGCCGCgCG- -5'
2739 3' -54.8 NC_001491.2 + 2713 0.74 0.51696
Target:  5'- aAGCAUGGAuCCAGCGUgGaggaGGCGCa- -3'
miRNA:   3'- aUUGUACCU-GGUCGUAgUg---CCGCGcg -5'
2739 3' -54.8 NC_001491.2 + 137687 0.74 0.526956
Target:  5'- --cCGUGGACCgAGCGggCGCGggaGCGCGCg -3'
miRNA:   3'- auuGUACCUGG-UCGUa-GUGC---CGCGCG- -5'
2739 3' -54.8 NC_001491.2 + 137709 0.72 0.619393
Target:  5'- -----cGGGgCGGCGUCGCGGCG-GCg -3'
miRNA:   3'- auuguaCCUgGUCGUAGUGCCGCgCG- -5'
2739 3' -54.8 NC_001491.2 + 35833 0.72 0.650651
Target:  5'- cAACGUcGGCCcGCAgguCGGCGCGCa -3'
miRNA:   3'- aUUGUAcCUGGuCGUaguGCCGCGCG- -5'
2739 3' -54.8 NC_001491.2 + 142574 0.71 0.712507
Target:  5'- aUAGCAUGG-CUGG-GUUACGGUGUGCg -3'
miRNA:   3'- -AUUGUACCuGGUCgUAGUGCCGCGCG- -5'
2739 3' -54.8 NC_001491.2 + 147284 0.7 0.73266
Target:  5'- cUGAgGUGGGCCGGgGagGCGGC-CGCc -3'
miRNA:   3'- -AUUgUACCUGGUCgUagUGCCGcGCG- -5'
2739 3' -54.8 NC_001491.2 + 116362 0.7 0.762186
Target:  5'- gUGGCccGGACCguGGCGcCGCuGGUGCGCu -3'
miRNA:   3'- -AUUGuaCCUGG--UCGUaGUG-CCGCGCG- -5'
2739 3' -54.8 NC_001491.2 + 111185 0.7 0.771802
Target:  5'- -----aGGACCAGCuaguCGGCGCaGCg -3'
miRNA:   3'- auuguaCCUGGUCGuaguGCCGCG-CG- -5'
2739 3' -54.8 NC_001491.2 + 19173 0.69 0.781289
Target:  5'- gAGCGU-GACCAGCucCACGGCG-GCc -3'
miRNA:   3'- aUUGUAcCUGGUCGuaGUGCCGCgCG- -5'
2739 3' -54.8 NC_001491.2 + 24043 0.69 0.808879
Target:  5'- ---aGUGGcaGCCAGUGUCugGGuCGCGg -3'
miRNA:   3'- auugUACC--UGGUCGUAGugCC-GCGCg -5'
2739 3' -54.8 NC_001491.2 + 13327 0.68 0.826456
Target:  5'- -cGCGU-GugCGGCAgccacgcgacUCACGGCcGCGCa -3'
miRNA:   3'- auUGUAcCugGUCGU----------AGUGCCG-CGCG- -5'
2739 3' -54.8 NC_001491.2 + 83443 0.68 0.826456
Target:  5'- -cGCA-GGAgCUAGUAUCaaauACGGUGCGCc -3'
miRNA:   3'- auUGUaCCU-GGUCGUAG----UGCCGCGCG- -5'
2739 3' -54.8 NC_001491.2 + 115607 0.68 0.843301
Target:  5'- -----cGGcCCAGCGaCGCGGCuuGCGCg -3'
miRNA:   3'- auuguaCCuGGUCGUaGUGCCG--CGCG- -5'
2739 3' -54.8 NC_001491.2 + 30883 0.68 0.843301
Target:  5'- ---gAUGGAggaaCCGGC--UAUGGCGCGCg -3'
miRNA:   3'- auugUACCU----GGUCGuaGUGCCGCGCG- -5'
2739 3' -54.8 NC_001491.2 + 116410 0.68 0.851429
Target:  5'- -cGCcUGGGCUccgacgAGCugcgccUCGCGGUGCGCg -3'
miRNA:   3'- auUGuACCUGG------UCGu-----AGUGCCGCGCG- -5'
2739 3' -54.8 NC_001491.2 + 97388 0.67 0.873069
Target:  5'- gAGCcagGGGCCAGCAcccaggcacagcCGCGGUcuGCGCg -3'
miRNA:   3'- aUUGua-CCUGGUCGUa-----------GUGCCG--CGCG- -5'
2739 3' -54.8 NC_001491.2 + 58133 0.67 0.874549
Target:  5'- cAACAgacGcGCCGGCAUCugGuuGCGCu -3'
miRNA:   3'- aUUGUa--CcUGGUCGUAGugCcgCGCG- -5'
2739 3' -54.8 NC_001491.2 + 1628 0.67 0.883949
Target:  5'- aGGCAUGGACCuucgcgaggaugaugAGC-UCagagagacgcucgACGGgGCGCa -3'
miRNA:   3'- aUUGUACCUGG---------------UCGuAG-------------UGCCgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.