miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2739 3' -54.8 NC_001491.2 + 116410 0.68 0.851429
Target:  5'- -cGCcUGGGCUccgacgAGCugcgccUCGCGGUGCGCg -3'
miRNA:   3'- auUGuACCUGG------UCGu-----AGUGCCGCGCG- -5'
2739 3' -54.8 NC_001491.2 + 117617 0.66 0.924369
Target:  5'- -----aGGACCAGCGUCcgaaaucggcucugGCGGgaGCGUc -3'
miRNA:   3'- auuguaCCUGGUCGUAG--------------UGCCg-CGCG- -5'
2739 3' -54.8 NC_001491.2 + 137687 0.74 0.526956
Target:  5'- --cCGUGGACCgAGCGggCGCGggaGCGCGCg -3'
miRNA:   3'- auuGUACCUGG-UCGUa-GUGC---CGCGCG- -5'
2739 3' -54.8 NC_001491.2 + 137709 0.72 0.619393
Target:  5'- -----cGGGgCGGCGUCGCGGCG-GCg -3'
miRNA:   3'- auuguaCCUgGUCGUAGUGCCGCgCG- -5'
2739 3' -54.8 NC_001491.2 + 138071 0.66 0.931352
Target:  5'- cGAgGUGGGgCggguuGGCAUUGCGGCG-GCg -3'
miRNA:   3'- aUUgUACCUgG-----UCGUAGUGCCGCgCG- -5'
2739 3' -54.8 NC_001491.2 + 142574 0.71 0.712507
Target:  5'- aUAGCAUGG-CUGG-GUUACGGUGUGCg -3'
miRNA:   3'- -AUUGUACCuGGUCgUAGUGCCGCGCG- -5'
2739 3' -54.8 NC_001491.2 + 144937 0.75 0.449404
Target:  5'- ---aGUGGACCaucuucAGCAUCGCGGCGaGCc -3'
miRNA:   3'- auugUACCUGG------UCGUAGUGCCGCgCG- -5'
2739 3' -54.8 NC_001491.2 + 146375 0.67 0.902211
Target:  5'- gGGCcgGGuaGCCGGC--CACGGCG-GCg -3'
miRNA:   3'- aUUGuaCC--UGGUCGuaGUGCCGCgCG- -5'
2739 3' -54.8 NC_001491.2 + 146841 0.67 0.895649
Target:  5'- -----cGGGCCAcCAccagaACGGCGCGCa -3'
miRNA:   3'- auuguaCCUGGUcGUag---UGCCGCGCG- -5'
2739 3' -54.8 NC_001491.2 + 147284 0.7 0.73266
Target:  5'- cUGAgGUGGGCCGGgGagGCGGC-CGCc -3'
miRNA:   3'- -AUUgUACCUGGUCgUagUGCCGcGCG- -5'
2739 3' -54.8 NC_001491.2 + 148272 0.77 0.362066
Target:  5'- --cCcgGGGCCAGCG-CACGGCGCagGCg -3'
miRNA:   3'- auuGuaCCUGGUCGUaGUGCCGCG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.