miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2739 3' -54.8 NC_001491.2 + 58133 0.67 0.874549
Target:  5'- cAACAgacGcGCCGGCAUCugGuuGCGCu -3'
miRNA:   3'- aUUGUa--CcUGGUCGUAGugCcgCGCG- -5'
2739 3' -54.8 NC_001491.2 + 41691 0.67 0.888849
Target:  5'- --cCAUGGAaacaUCAGC-UCGCGGaacgGCGCg -3'
miRNA:   3'- auuGUACCU----GGUCGuAGUGCCg---CGCG- -5'
2739 3' -54.8 NC_001491.2 + 39323 0.66 0.936438
Target:  5'- gGACGUGGcCUGGUcuacCGCGGCGCu- -3'
miRNA:   3'- aUUGUACCuGGUCGua--GUGCCGCGcg -5'
2739 3' -54.8 NC_001491.2 + 35833 0.72 0.650651
Target:  5'- cAACGUcGGCCcGCAgguCGGCGCGCa -3'
miRNA:   3'- aUUGUAcCUGGuCGUaguGCCGCGCG- -5'
2739 3' -54.8 NC_001491.2 + 30883 0.68 0.843301
Target:  5'- ---gAUGGAggaaCCGGC--UAUGGCGCGCg -3'
miRNA:   3'- auugUACCU----GGUCGuaGUGCCGCGCG- -5'
2739 3' -54.8 NC_001491.2 + 24043 0.69 0.808879
Target:  5'- ---aGUGGcaGCCAGUGUCugGGuCGCGg -3'
miRNA:   3'- auugUACC--UGGUCGUAGugCC-GCGCg -5'
2739 3' -54.8 NC_001491.2 + 19606 0.66 0.914607
Target:  5'- aAGCugccGGGCCGGCAUCGCcuaaaCGUGCc -3'
miRNA:   3'- aUUGua--CCUGGUCGUAGUGcc---GCGCG- -5'
2739 3' -54.8 NC_001491.2 + 19173 0.69 0.781289
Target:  5'- gAGCGU-GACCAGCucCACGGCG-GCc -3'
miRNA:   3'- aUUGUAcCUGGUCGuaGUGCCGCgCG- -5'
2739 3' -54.8 NC_001491.2 + 13327 0.68 0.826456
Target:  5'- -cGCGU-GugCGGCAgccacgcgacUCACGGCcGCGCa -3'
miRNA:   3'- auUGUAcCugGUCGU----------AGUGCCG-CGCG- -5'
2739 3' -54.8 NC_001491.2 + 2713 0.74 0.51696
Target:  5'- aAGCAUGGAuCCAGCGUgGaggaGGCGCa- -3'
miRNA:   3'- aUUGUACCU-GGUCGUAgUg---CCGCGcg -5'
2739 3' -54.8 NC_001491.2 + 1628 0.67 0.883949
Target:  5'- aGGCAUGGACCuucgcgaggaugaugAGC-UCagagagacgcucgACGGgGCGCa -3'
miRNA:   3'- aUUGUACCUGG---------------UCGuAG-------------UGCCgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.