Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2739 | 5' | -53.8 | NC_001491.2 | + | 121541 | 0.66 | 0.958803 |
Target: 5'- uCGAUGCGCUGGCUggagCGUggggacGGGUCCc-- -3' miRNA: 3'- -GCUAUGCGGCUGGa---GCG------UCUAGGuau -5' |
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2739 | 5' | -53.8 | NC_001491.2 | + | 145508 | 0.66 | 0.958803 |
Target: 5'- --cUugGCCagauuGGCCUCGCGGAcgcccUCCAg- -3' miRNA: 3'- gcuAugCGG-----CUGGAGCGUCU-----AGGUau -5' |
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2739 | 5' | -53.8 | NC_001491.2 | + | 9494 | 0.66 | 0.950896 |
Target: 5'- aGGUACGUCGACCUUcgaauucagGCGGAcguggCCGa- -3' miRNA: 3'- gCUAUGCGGCUGGAG---------CGUCUa----GGUau -5' |
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2739 | 5' | -53.8 | NC_001491.2 | + | 35839 | 0.66 | 0.950896 |
Target: 5'- gGGUcacaACGUCGGCC-CGCAGGUCgGc- -3' miRNA: 3'- gCUA----UGCGGCUGGaGCGUCUAGgUau -5' |
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2739 | 5' | -53.8 | NC_001491.2 | + | 139987 | 0.68 | 0.9138 |
Target: 5'- cCGcUGCGCCGcgccguggggcgguACCUCGUGGAUCUcgGc -3' miRNA: 3'- -GCuAUGCGGC--------------UGGAGCGUCUAGGuaU- -5' |
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2739 | 5' | -53.8 | NC_001491.2 | + | 54985 | 0.69 | 0.8528 |
Target: 5'- gGAgguUGCUGGCCUCGCAGgAUUCGg- -3' miRNA: 3'- gCUau-GCGGCUGGAGCGUC-UAGGUau -5' |
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2739 | 5' | -53.8 | NC_001491.2 | + | 131356 | 0.75 | 0.559322 |
Target: 5'- cCGAUGCGCUGACCUCaCAGAgauagUCCu-- -3' miRNA: 3'- -GCUAUGCGGCUGGAGcGUCU-----AGGuau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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