miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27391 5' -50.9 NC_005859.1 + 12318 0.66 0.984719
Target:  5'- gGCAauCGGGgccaauuacAAUGUGGAACAGUCCUa -3'
miRNA:   3'- -UGUc-GUCCa--------UUACGCCUUGUUAGGGg -5'
27391 5' -50.9 NC_005859.1 + 3677 0.67 0.975446
Target:  5'- cCAGUcaaAGGgaaauuaUAGUGgGGAAUAuUCCCCa -3'
miRNA:   3'- uGUCG---UCC-------AUUACgCCUUGUuAGGGG- -5'
27391 5' -50.9 NC_005859.1 + 115096 0.67 0.975446
Target:  5'- cCAGUcaaAGGgaaauuaUAGUGgGGAAUAuUCCCCa -3'
miRNA:   3'- uGUCG---UCC-------AUUACgCCUUGUuAGGGG- -5'
27391 5' -50.9 NC_005859.1 + 51616 0.68 0.951539
Target:  5'- gGCAGUuuuccGG-AAUGCGGGAaug-CCCCa -3'
miRNA:   3'- -UGUCGu----CCaUUACGCCUUguuaGGGG- -5'
27391 5' -50.9 NC_005859.1 + 10060 0.68 0.947102
Target:  5'- gGC-GCAGGauUGGUGCGGAGCA--CCUg -3'
miRNA:   3'- -UGuCGUCC--AUUACGCCUUGUuaGGGg -5'
27391 5' -50.9 NC_005859.1 + 121480 0.68 0.947102
Target:  5'- gGC-GCAGGauUGGUGCGGAGCA--CCUg -3'
miRNA:   3'- -UGuCGUCC--AUUACGCCUUGUuaGGGg -5'
27391 5' -50.9 NC_005859.1 + 57119 0.69 0.926732
Target:  5'- cGCAGCA-GUAcgGUuaagaauagGGAAUAAUUCCCa -3'
miRNA:   3'- -UGUCGUcCAUuaCG---------CCUUGUUAGGGG- -5'
27391 5' -50.9 NC_005859.1 + 3860 0.72 0.81132
Target:  5'- aGCcGCAGGcgaauaaauuuaauUAGUGgGGAAUAuUCCCCa -3'
miRNA:   3'- -UGuCGUCC--------------AUUACgCCUUGUuAGGGG- -5'
27391 5' -50.9 NC_005859.1 + 115279 0.72 0.81132
Target:  5'- aGCcGCAGGcgaauaaauuuaauUAGUGgGGAAUAuUCCCCa -3'
miRNA:   3'- -UGuCGUCC--------------AUUACgCCUUGUuAGGGG- -5'
27391 5' -50.9 NC_005859.1 + 112451 0.77 0.543458
Target:  5'- aAUAGCGGGUAAUGCuGAAUuaaucuAAUCCCUc -3'
miRNA:   3'- -UGUCGUCCAUUACGcCUUG------UUAGGGG- -5'
27391 5' -50.9 NC_005859.1 + 1031 0.77 0.543458
Target:  5'- aAUAGCGGGUAAUGCuGAAUuaaucuAAUCCCUc -3'
miRNA:   3'- -UGUCGUCCAUUACGcCUUG------UUAGGGG- -5'
27391 5' -50.9 NC_005859.1 + 35381 0.77 0.53298
Target:  5'- -aGGUAGGguuUGCGGGuuCGAUCCCCa -3'
miRNA:   3'- ugUCGUCCauuACGCCUu-GUUAGGGG- -5'
27391 5' -50.9 NC_005859.1 + 4648 1.11 0.004723
Target:  5'- uACAGCAGGUAAUGCGGAACAAUCCCCc -3'
miRNA:   3'- -UGUCGUCCAUUACGCCUUGUUAGGGG- -5'
27391 5' -50.9 NC_005859.1 + 116067 1.11 0.004723
Target:  5'- uACAGCAGGUAAUGCGGAACAAUCCCCc -3'
miRNA:   3'- -UGUCGUCCAUUACGCCUUGUUAGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.