miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
27395	3'	-55.6	NC_005859.1	+	17514	0.67	0.805008
	Target:  5'- uGCCCguugaaaACACCGCCAGUAUcUA-GGUa -3' miRNA:   3'- gUGGG-------UGUGGCGGUCGUAaAUgCCGc -5'
27395	3'	-55.6	NC_005859.1	+	64385	0.67	0.805008
	Target:  5'- aGCCCACGCCGaCCuucgcgcAGCAUUcucugaUGCuGGCu -3' miRNA:   3'- gUGGGUGUGGC-GG-------UCGUAA------AUG-CCGc -5'
27395	3'	-55.6	NC_005859.1	+	7335	0.68	0.7968
	Target:  5'- uGCCCGCuuCCaGUuuugCAGCAUUUacaACGGCGg -3' miRNA:   3'- gUGGGUGu-GG-CG----GUCGUAAA---UGCCGC- -5'
27395	3'	-55.6	NC_005859.1	+	118755	0.68	0.7968
	Target:  5'- uGCCCGCuuCCaGUuuugCAGCAUUUacaACGGCGg -3' miRNA:   3'- gUGGGUGu-GG-CG----GUCGUAAA---UGCCGC- -5'
27395	3'	-55.6	NC_005859.1	+	94218	0.73	0.493445
	Target:  5'- cCACCaAUACCGCCAGCAguaAgGGCa -3' miRNA:   3'- -GUGGgUGUGGCGGUCGUaaaUgCCGc -5'
27395	3'	-55.6	NC_005859.1	+	1996	1.03	0.006097
	Target:  5'- aCACaCCACACCGCCAGCAUUUACGGCGg -3' miRNA:   3'- -GUG-GGUGUGGCGGUCGUAAAUGCCGC- -5'
27395	3'	-55.6	NC_005859.1	+	113414	1.1	0.002078
	Target:  5'- aCACCCACACCGCCAGCAUUUACGGCGg -3' miRNA:   3'- -GUGGGUGUGGCGGUCGUAAAUGCCGC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home