miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
27398	5'	-53.2	NC_005859.1	+	1144	0.66	0.934551
	Target:  5'- aGGUguauaCAUGCGCUggcauucguuccAGCGUAUCGGgCGAg- -3' miRNA:   3'- -CCG-----GUAUGCGA------------UCGCGUAGUC-GCUau -5'
27398	5'	-53.2	NC_005859.1	+	112564	0.66	0.934551
	Target:  5'- aGGUguauaCAUGCGCUggcauucguuccAGCGUAUCGGgCGAg- -3' miRNA:   3'- -CCG-----GUAUGCGA------------UCGCGUAGUC-GCUau -5'
27398	5'	-53.2	NC_005859.1	+	94228	0.66	0.929214
	Target:  5'- cGCCAgcaGUaAGgGCAUUGGCGAUAg -3' miRNA:   3'- cCGGUaugCGaUCgCGUAGUCGCUAU- -5'
27398	5'	-53.2	NC_005859.1	+	85147	0.67	0.905243
	Target:  5'- uGGCUAUuucgaaGuCUGGUGCuAUCAGCGAg- -3' miRNA:   3'- -CCGGUAug----C-GAUCGCG-UAGUCGCUau -5'
27398	5'	-53.2	NC_005859.1	+	38255	0.67	0.898601
	Target:  5'- cGGCUA-ACGCaGGUGCuuUCGGUGGUGa -3' miRNA:   3'- -CCGGUaUGCGaUCGCGu-AGUCGCUAU- -5'
27398	5'	-53.2	NC_005859.1	+	68769	0.73	0.604059
	Target:  5'- aGCCAUGuuaGCUGGUGUAUCAGCa--- -3' miRNA:   3'- cCGGUAUg--CGAUCGCGUAGUCGcuau -5'
27398	5'	-53.2	NC_005859.1	+	943	1.1	0.003131
	Target:  5'- aGGCCAUACGCUAGCGCAUCAGCGAUAa -3' miRNA:   3'- -CCGGUAUGCGAUCGCGUAGUCGCUAU- -5'
27398	5'	-53.2	NC_005859.1	+	112362	1.1	0.003131
	Target:  5'- aGGCCAUACGCUAGCGCAUCAGCGAUAa -3' miRNA:   3'- -CCGGUAUGCGAUCGCGUAGUCGCUAU- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home