miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2740 5' -54.5 NC_001491.2 + 70424 0.66 0.941433
Target:  5'- cGGcAGAGGCgACugGguGGCGGuCAAa -3'
miRNA:   3'- cCCaUCUCCGaUGugUguCUGCC-GUU- -5'
2740 5' -54.5 NC_001491.2 + 24274 0.66 0.941433
Target:  5'- ---gAGGGGCUGCAUGCcauguaccuGGGCGGCc- -3'
miRNA:   3'- cccaUCUCCGAUGUGUG---------UCUGCCGuu -5'
2740 5' -54.5 NC_001491.2 + 138516 0.66 0.936081
Target:  5'- cGGG-AGAGugcugggguccgcGCUGCugGCAucGGCGGCGu -3'
miRNA:   3'- -CCCaUCUC-------------CGAUGugUGU--CUGCCGUu -5'
2740 5' -54.5 NC_001491.2 + 26957 0.66 0.928297
Target:  5'- uGGGUAuccGAGGUgccgaaucagauugACACAaAGACGGUAGg -3'
miRNA:   3'- -CCCAU---CUCCGa-------------UGUGUgUCUGCCGUU- -5'
2740 5' -54.5 NC_001491.2 + 147095 0.66 0.926127
Target:  5'- cGGGgacGGuGGGC--CACAgGGGCGGCAGg -3'
miRNA:   3'- -CCCa--UC-UCCGauGUGUgUCUGCCGUU- -5'
2740 5' -54.5 NC_001491.2 + 4737 0.66 0.914673
Target:  5'- cGGGaacccucGAGGCgauagacGCGCACAaGCGGCGAu -3'
miRNA:   3'- -CCCau-----CUCCGa------UGUGUGUcUGCCGUU- -5'
2740 5' -54.5 NC_001491.2 + 61463 0.67 0.908573
Target:  5'- cGGGUAGGuacgauCUGCGCGCAGGaGGCGc -3'
miRNA:   3'- -CCCAUCUcc----GAUGUGUGUCUgCCGUu -5'
2740 5' -54.5 NC_001491.2 + 10590 0.67 0.902227
Target:  5'- aGGGUcGcGGGCagaaGCGCAUuGACGGCAGc -3'
miRNA:   3'- -CCCAuC-UCCGa---UGUGUGuCUGCCGUU- -5'
2740 5' -54.5 NC_001491.2 + 125569 0.68 0.851204
Target:  5'- aGGG-GGGGGaUGCGCGCcccgAGGCGGCGc -3'
miRNA:   3'- -CCCaUCUCCgAUGUGUG----UCUGCCGUu -5'
2740 5' -54.5 NC_001491.2 + 140235 0.68 0.851204
Target:  5'- cGGGgacGGGGGCgg-GCGCGGACGGg-- -3'
miRNA:   3'- -CCCa--UCUCCGaugUGUGUCUGCCguu -5'
2740 5' -54.5 NC_001491.2 + 100321 0.69 0.790095
Target:  5'- uGGUAGAGGCUAU-CACAaaaGGCGAc -3'
miRNA:   3'- cCCAUCUCCGAUGuGUGUcugCCGUU- -5'
2740 5' -54.5 NC_001491.2 + 43220 0.7 0.771161
Target:  5'- cGGUAGAGGCgauguC-CAGGCGGCu- -3'
miRNA:   3'- cCCAUCUCCGaugu-GuGUCUGCCGuu -5'
2740 5' -54.5 NC_001491.2 + 60095 0.7 0.751708
Target:  5'- ---cGGAGGCUACACugAGcgcguGCGGUAGg -3'
miRNA:   3'- cccaUCUCCGAUGUGugUC-----UGCCGUU- -5'
2740 5' -54.5 NC_001491.2 + 138417 0.7 0.741812
Target:  5'- cGGGUAGAGGaacgGCAgGCGGACGa--- -3'
miRNA:   3'- -CCCAUCUCCga--UGUgUGUCUGCcguu -5'
2740 5' -54.5 NC_001491.2 + 57379 0.71 0.731815
Target:  5'- uGGUGGGGGCUGaGCAgGGGCuGGCu- -3'
miRNA:   3'- cCCAUCUCCGAUgUGUgUCUG-CCGuu -5'
2740 5' -54.5 NC_001491.2 + 137714 0.71 0.721728
Target:  5'- cGGGgcGGGGCgGCGuCGCGG-CGGCGg -3'
miRNA:   3'- -CCCauCUCCGaUGU-GUGUCuGCCGUu -5'
2740 5' -54.5 NC_001491.2 + 20909 0.71 0.700296
Target:  5'- gGGGUGGGGGCaguaugcgaagagUACuCAgAGAUGGCGg -3'
miRNA:   3'- -CCCAUCUCCG-------------AUGuGUgUCUGCCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.