miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27400 3' -47 NC_005859.1 + 67342 0.66 0.999765
Target:  5'- gCUAUCGCugCugAacUGGCUgcUGAAacUGGCa -3'
miRNA:   3'- -GGUAGUGugGugU--AUCGA--GCUU--AUCG- -5'
27400 3' -47 NC_005859.1 + 69171 0.66 0.999699
Target:  5'- uCCAUCugccagaaACAUaACGUGGCUgGuGUAGCu -3'
miRNA:   3'- -GGUAG--------UGUGgUGUAUCGAgCuUAUCG- -5'
27400 3' -47 NC_005859.1 + 39944 0.66 0.999699
Target:  5'- gCAUCuGCAUCACGUucGUUUGcAAUAGCc -3'
miRNA:   3'- gGUAG-UGUGGUGUAu-CGAGC-UUAUCG- -5'
27400 3' -47 NC_005859.1 + 113872 0.66 0.999618
Target:  5'- aCCAUCACaACCGCGcaucUGGCguauuccUAGCg -3'
miRNA:   3'- -GGUAGUG-UGGUGU----AUCGagcuu--AUCG- -5'
27400 3' -47 NC_005859.1 + 2453 0.66 0.999618
Target:  5'- aCCAUCACaACCGCGcaucUGGCguauuccUAGCg -3'
miRNA:   3'- -GGUAGUG-UGGUGU----AUCGagcuu--AUCG- -5'
27400 3' -47 NC_005859.1 + 84450 0.67 0.999396
Target:  5'- -gGUCAcCACCAaacaAUGGCUCacuUGGCg -3'
miRNA:   3'- ggUAGU-GUGGUg---UAUCGAGcuuAUCG- -5'
27400 3' -47 NC_005859.1 + 64260 0.68 0.997547
Target:  5'- uUCAUCAguCCACugAGUUgGAGUAGUc -3'
miRNA:   3'- -GGUAGUguGGUGuaUCGAgCUUAUCG- -5'
27400 3' -47 NC_005859.1 + 37102 0.69 0.993409
Target:  5'- --cUCAUACCAUAUgAGCUUGAGaaccagaauuUGGCg -3'
miRNA:   3'- gguAGUGUGGUGUA-UCGAGCUU----------AUCG- -5'
27400 3' -47 NC_005859.1 + 82687 0.7 0.992357
Target:  5'- -gAUUGCGCCACGUGGUUCuGGGgccucGGCg -3'
miRNA:   3'- ggUAGUGUGGUGUAUCGAG-CUUa----UCG- -5'
27400 3' -47 NC_005859.1 + 3865 0.71 0.980791
Target:  5'- -aAUCACACgCACGUAGUgcgcuuugCGGAUAGa -3'
miRNA:   3'- ggUAGUGUG-GUGUAUCGa-------GCUUAUCg -5'
27400 3' -47 NC_005859.1 + 26199 0.71 0.980791
Target:  5'- aCCGUUACGCUGaaugguaAUAGCUgGAGUAGa -3'
miRNA:   3'- -GGUAGUGUGGUg------UAUCGAgCUUAUCg -5'
27400 3' -47 NC_005859.1 + 115284 0.71 0.980791
Target:  5'- -aAUCACACgCACGUAGUgcgcuuugCGGAUAGa -3'
miRNA:   3'- ggUAGUGUG-GUGUAUCGa-------GCUUAUCg -5'
27400 3' -47 NC_005859.1 + 61644 0.71 0.975831
Target:  5'- aCgGUCGCGCCugAUuGCUUGGAaacgcauguuUGGCg -3'
miRNA:   3'- -GgUAGUGUGGugUAuCGAGCUU----------AUCG- -5'
27400 3' -47 NC_005859.1 + 110768 0.73 0.94177
Target:  5'- cCCAUCACACCuucCAUAGUgucUUGuGUGGUa -3'
miRNA:   3'- -GGUAGUGUGGu--GUAUCG---AGCuUAUCG- -5'
27400 3' -47 NC_005859.1 + 88856 0.75 0.907062
Target:  5'- aUAUCuACugCGCGUAGCUCaaaAAUAGCu -3'
miRNA:   3'- gGUAG-UGugGUGUAUCGAGc--UUAUCG- -5'
27400 3' -47 NC_005859.1 + 82506 1.16 0.006696
Target:  5'- aCCAUCACACCACAUAGCUCGAAUAGCu -3'
miRNA:   3'- -GGUAGUGUGGUGUAUCGAGCUUAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.