miRNA display CGI


Results 1 - 8 of 8 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27401 5' -44.6 NC_005859.1 + 51084 0.66 0.999995
Target:  5'- cGGGcguguAGGuuGAGUAAUUUCAACACa-- -3'
miRNA:   3'- -CCU-----UCUucCUCAUUGAAGUUGUGagu -5'
27401 5' -44.6 NC_005859.1 + 56576 0.66 0.999995
Target:  5'- --cGGAAGGcucGUAcaccACuUUCAACACUCAa -3'
miRNA:   3'- ccuUCUUCCu--CAU----UG-AAGUUGUGAGU- -5'
27401 5' -44.6 NC_005859.1 + 109866 0.66 0.999995
Target:  5'- uGGGAGAAGGGGguuuGCaUCAAgugcaaugUACUUAg -3'
miRNA:   3'- -CCUUCUUCCUCau--UGaAGUU--------GUGAGU- -5'
27401 5' -44.6 NC_005859.1 + 78053 0.66 0.999984
Target:  5'- uGAAGAgauuauGGGuGGUGACUUUcaAACAUUCAc -3'
miRNA:   3'- cCUUCU------UCC-UCAUUGAAG--UUGUGAGU- -5'
27401 5' -44.6 NC_005859.1 + 58769 0.68 0.9999
Target:  5'- uGGAAGAugauauuuGGGAGUAcACUccaGAUACUCu -3'
miRNA:   3'- -CCUUCU--------UCCUCAU-UGAag-UUGUGAGu -5'
27401 5' -44.6 NC_005859.1 + 103895 0.74 0.974677
Target:  5'- uGAAGAGGGAGcAGCaUUAACACUUu -3'
miRNA:   3'- cCUUCUUCCUCaUUGaAGUUGUGAGu -5'
27401 5' -44.6 NC_005859.1 + 82501 0.77 0.921611
Target:  5'- uGGggGguGGGGUccAACUUCAACGC-CAa -3'
miRNA:   3'- -CCuuCuuCCUCA--UUGAAGUUGUGaGU- -5'
27401 5' -44.6 NC_005859.1 + 98437 1.14 0.017196
Target:  5'- cGGAAGAAGGAGUAACUUCAACACUCAu -3'
miRNA:   3'- -CCUUCUUCCUCAUUGAAGUUGUGAGU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.