miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27402 3' -50 NC_005859.1 + 68769 0.66 0.986425
Target:  5'- aGCCAUGUUAGCUGguguaucagCACUagcaaUGCGa -3'
miRNA:   3'- aUGGUACGAUUGACaaa------GUGGg----ACGU- -5'
27402 3' -50 NC_005859.1 + 50029 0.66 0.984578
Target:  5'- cUACC-UGCUGGCUGUUUaaaACCCc--- -3'
miRNA:   3'- -AUGGuACGAUUGACAAAg--UGGGacgu -5'
27402 3' -50 NC_005859.1 + 30419 0.67 0.97763
Target:  5'- --aCAUGCUAAUUgaggaugGUUUCgcuaACCCUGCGa -3'
miRNA:   3'- augGUACGAUUGA-------CAAAG----UGGGACGU- -5'
27402 3' -50 NC_005859.1 + 237 0.7 0.911603
Target:  5'- -----aGUUGaaAUUGUUUCACCCUGCAa -3'
miRNA:   3'- augguaCGAU--UGACAAAGUGGGACGU- -5'
27402 3' -50 NC_005859.1 + 111657 0.7 0.911603
Target:  5'- -----aGUUGaaAUUGUUUCACCCUGCAa -3'
miRNA:   3'- augguaCGAU--UGACAAAGUGGGACGU- -5'
27402 3' -50 NC_005859.1 + 56 1.08 0.007668
Target:  5'- uUACCAUGCUAACUGUUUCACCCUGCAa -3'
miRNA:   3'- -AUGGUACGAUUGACAAAGUGGGACGU- -5'
27402 3' -50 NC_005859.1 + 111476 1.08 0.007668
Target:  5'- uUACCAUGCUAACUGUUUCACCCUGCAa -3'
miRNA:   3'- -AUGGUACGAUUGACAAAGUGGGACGU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.