miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27405 3' -44.4 NC_005869.1 + 17144 0.66 0.990856
Target:  5'- cGUGGggGugGGCAccGAGCcGGUGGUGc- -3'
miRNA:   3'- -CAUCuuUuuUCGU--CUCG-CUACUACua -5'
27405 3' -44.4 NC_005869.1 + 2690 0.67 0.978106
Target:  5'- -cAGAGGGAcGCGGAGCGGgagGAgGAg -3'
miRNA:   3'- caUCUUUUUuCGUCUCGCUa--CUaCUa -5'
27405 3' -44.4 NC_005869.1 + 9527 0.68 0.971793
Target:  5'- -gAGggGcAGGCuGAGCGcacUGAUGAUg -3'
miRNA:   3'- caUCuuUuUUCGuCUCGCu--ACUACUA- -5'
27405 3' -44.4 NC_005869.1 + 17079 0.68 0.968187
Target:  5'- -cGGggGcucGGCAcGGGCGGUGGUGGc -3'
miRNA:   3'- caUCuuUuu-UCGU-CUCGCUACUACUa -5'
27405 3' -44.4 NC_005869.1 + 404 0.68 0.968187
Target:  5'- -gAGAAaccGAAAGCGGGGCGA-GAgGAg -3'
miRNA:   3'- caUCUU---UUUUCGUCUCGCUaCUaCUa -5'
27405 3' -44.4 NC_005869.1 + 2270 0.68 0.968187
Target:  5'- cUGGAGugccgcGCGGGGCaGGUGGUGAUg -3'
miRNA:   3'- cAUCUUuuuu--CGUCUCG-CUACUACUA- -5'
27405 3' -44.4 NC_005869.1 + 6301 0.68 0.964266
Target:  5'- uUGGAGAGAAGCuuGGCGAUGcugcgGAg -3'
miRNA:   3'- cAUCUUUUUUCGucUCGCUACua---CUa -5'
27405 3' -44.4 NC_005869.1 + 4296 0.69 0.939009
Target:  5'- -aGGAAAAAGGUgccguugGGAGUGGUGGUGu- -3'
miRNA:   3'- caUCUUUUUUCG-------UCUCGCUACUACua -5'
27405 3' -44.4 NC_005869.1 + 3573 0.69 0.939009
Target:  5'- -aGGAAAAAGGUgccguugGGAGUGGUGGUGu- -3'
miRNA:   3'- caUCUUUUUUCG-------UCUCGCUACUACua -5'
27405 3' -44.4 NC_005869.1 + 9942 0.72 0.823857
Target:  5'- cGUGGGcgGAGGUGGcGGCGGUGGUGGc -3'
miRNA:   3'- -CAUCUuuUUUCGUC-UCGCUACUACUa -5'
27405 3' -44.4 NC_005869.1 + 15445 0.74 0.756712
Target:  5'- -aGGGAGGGGGCucgucGGAGCGgAUGAUGAUc -3'
miRNA:   3'- caUCUUUUUUCG-----UCUCGC-UACUACUA- -5'
27405 3' -44.4 NC_005869.1 + 32651 1.08 0.007668
Target:  5'- aGUAGAAAAAAGCAGAGCGAUGAUGAUg -3'
miRNA:   3'- -CAUCUUUUUUCGUCUCGCUACUACUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.