miRNA display CGI


Results 21 - 40 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27407 3' -53.2 NC_005869.1 + 30896 0.68 0.586592
Target:  5'- cCCCAGAGuGCCUAGaGAacccuGGccGuCAGCCg -3'
miRNA:   3'- -GGGUCUUuCGGGUC-CU-----UCaaC-GUCGG- -5'
27407 3' -53.2 NC_005869.1 + 20288 0.68 0.586592
Target:  5'- cCUCGGuGGGGCCCAGGuaccgcgGCGGCa -3'
miRNA:   3'- -GGGUC-UUUCGGGUCCuucaa--CGUCGg -5'
27407 3' -53.2 NC_005869.1 + 10128 0.68 0.584291
Target:  5'- cCCCAGccGGCgCgGGGGAGgccgcaagcgcGCGGCCu -3'
miRNA:   3'- -GGGUCuuUCG-GgUCCUUCaa---------CGUCGG- -5'
27407 3' -53.2 NC_005869.1 + 24563 0.68 0.575106
Target:  5'- gCCUucGAGcugcGGCCCcGGGAGg-GCGGCCg -3'
miRNA:   3'- -GGGu-CUU----UCGGGuCCUUCaaCGUCGG- -5'
27407 3' -53.2 NC_005869.1 + 22243 0.68 0.552301
Target:  5'- uCCCAaGGcucGUCCAGGGAGg-GCAGCg -3'
miRNA:   3'- -GGGU-CUuu-CGGGUCCUUCaaCGUCGg -5'
27407 3' -53.2 NC_005869.1 + 6395 0.68 0.552301
Target:  5'- uCCCGGgcGGUCCGGaGAAGggguugaUGUAGaCCg -3'
miRNA:   3'- -GGGUCuuUCGGGUC-CUUCa------ACGUC-GG- -5'
27407 3' -53.2 NC_005869.1 + 21749 0.68 0.540999
Target:  5'- uUCCGcGccGCCugCAGGAAGgugUGCGGCCc -3'
miRNA:   3'- -GGGUcUuuCGG--GUCCUUCa--ACGUCGG- -5'
27407 3' -53.2 NC_005869.1 + 8395 0.68 0.540999
Target:  5'- -gCAGuGAGCCCAGaGggGcgGCGGgCa -3'
miRNA:   3'- ggGUCuUUCGGGUC-CuuCaaCGUCgG- -5'
27407 3' -53.2 NC_005869.1 + 21598 0.68 0.529776
Target:  5'- cUCCgcgaAGGGAGCcaCCAGGAgcAGcaGCAGCCg -3'
miRNA:   3'- -GGG----UCUUUCG--GGUCCU--UCaaCGUCGG- -5'
27407 3' -53.2 NC_005869.1 + 21908 0.68 0.529776
Target:  5'- gCCAGGcuGCCCAGGuuGUUGgC-GCUc -3'
miRNA:   3'- gGGUCUuuCGGGUCCuuCAAC-GuCGG- -5'
27407 3' -53.2 NC_005869.1 + 27938 0.68 0.529776
Target:  5'- aCCCAccGAAGaCuCCGGGAccacAGaUGCAGCCg -3'
miRNA:   3'- -GGGU--CUUUcG-GGUCCU----UCaACGUCGG- -5'
27407 3' -53.2 NC_005869.1 + 31037 0.69 0.519749
Target:  5'- cCCCGGuAGGacugcucguccaccaCCAGGGAGcUGUAGCUg -3'
miRNA:   3'- -GGGUCuUUCg--------------GGUCCUUCaACGUCGG- -5'
27407 3' -53.2 NC_005869.1 + 24784 0.69 0.51753
Target:  5'- aCCCAGcacGCCCccgcccuccuuagAGGAGGaggUGCGGCa -3'
miRNA:   3'- -GGGUCuuuCGGG-------------UCCUUCa--ACGUCGg -5'
27407 3' -53.2 NC_005869.1 + 7644 0.69 0.507596
Target:  5'- gCCAGggGGUCCucGggGUcguccgGCAGgCCg -3'
miRNA:   3'- gGGUCuuUCGGGucCuuCAa-----CGUC-GG- -5'
27407 3' -53.2 NC_005869.1 + 15215 0.69 0.485819
Target:  5'- aCCUGGggGGCCUuuGGAacucgccggAGccGCGGCCg -3'
miRNA:   3'- -GGGUCuuUCGGGu-CCU---------UCaaCGUCGG- -5'
27407 3' -53.2 NC_005869.1 + 6859 0.69 0.485819
Target:  5'- gUgGGAGGGCgCgAGGAGGUU-CGGCCg -3'
miRNA:   3'- gGgUCUUUCG-GgUCCUUCAAcGUCGG- -5'
27407 3' -53.2 NC_005869.1 + 7542 0.7 0.443674
Target:  5'- gCCAGGAcgaucucaucgaAGCCCGaGAuGUUGUGGCCc -3'
miRNA:   3'- gGGUCUU------------UCGGGUcCUuCAACGUCGG- -5'
27407 3' -53.2 NC_005869.1 + 15282 0.7 0.423385
Target:  5'- gCCGcGggGGCCgGGGcGGggGCGGCg -3'
miRNA:   3'- gGGU-CuuUCGGgUCCuUCaaCGUCGg -5'
27407 3' -53.2 NC_005869.1 + 19174 0.71 0.375195
Target:  5'- cUCCGGGAAGCgguuaaagaCCAGGguGUUGUugguGGCCu -3'
miRNA:   3'- -GGGUCUUUCG---------GGUCCuuCAACG----UCGG- -5'
27407 3' -53.2 NC_005869.1 + 13382 0.71 0.375195
Target:  5'- gCCCAGGAgcugggagcgguAGCgCAGGccguAGUUGCGGUg -3'
miRNA:   3'- -GGGUCUU------------UCGgGUCCu---UCAACGUCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.