Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
27407 | 5' | -54.1 | NC_005869.1 | + | 11437 | 0.65 | 0.6315 |
Target: 5'- -cGGCUGGAgcgcgugGUCAG--CACCUCGcGGCg -3' miRNA: 3'- aaCCGAUUU-------UAGUCugGUGGGGC-CCG- -5' |
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27407 | 5' | -54.1 | NC_005869.1 | + | 3164 | 0.66 | 0.621022 |
Target: 5'- -cGGCagaUGAAAgugaCAGACgCGCUgCGGGCc -3' miRNA: 3'- aaCCG---AUUUUa---GUCUG-GUGGgGCCCG- -5' |
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27407 | 5' | -54.1 | NC_005869.1 | + | 2059 | 0.66 | 0.597781 |
Target: 5'- cUGGUUuAGAUCGccGCCGgCCCGGGg -3' miRNA: 3'- aACCGAuUUUAGUc-UGGUgGGGCCCg -5' |
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27407 | 5' | -54.1 | NC_005869.1 | + | 20355 | 0.66 | 0.597781 |
Target: 5'- aUGGCgGAAAcggagCGGAgCACuaCCUGGGCa -3' miRNA: 3'- aACCGaUUUUa----GUCUgGUG--GGGCCCG- -5' |
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27407 | 5' | -54.1 | NC_005869.1 | + | 17461 | 0.66 | 0.597781 |
Target: 5'- -cGGCU------GGACCGCCgCgGGGCu -3' miRNA: 3'- aaCCGAuuuuagUCUGGUGG-GgCCCG- -5' |
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27407 | 5' | -54.1 | NC_005869.1 | + | 20628 | 0.66 | 0.574671 |
Target: 5'- cUGGCcacgggCAGGCCcaucUCCUGGGCg -3' miRNA: 3'- aACCGauuuuaGUCUGGu---GGGGCCCG- -5' |
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27407 | 5' | -54.1 | NC_005869.1 | + | 15565 | 0.67 | 0.56319 |
Target: 5'- gUGGCgcgccGGAggCGGAgCACCCgGcGGCg -3' miRNA: 3'- aACCGa----UUUuaGUCUgGUGGGgC-CCG- -5' |
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27407 | 5' | -54.1 | NC_005869.1 | + | 13393 | 0.67 | 0.556331 |
Target: 5'- cUGGCgcacgcgcgcccagGAGAU-GGGCCugCCCGuGGCc -3' miRNA: 3'- aACCGa-------------UUUUAgUCUGGugGGGC-CCG- -5' |
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27407 | 5' | -54.1 | NC_005869.1 | + | 16612 | 0.67 | 0.544954 |
Target: 5'- cUGGCUccgcgccgggCGGGCCgGCCCCaGGCc -3' miRNA: 3'- aACCGAuuuua-----GUCUGG-UGGGGcCCG- -5' |
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27407 | 5' | -54.1 | NC_005869.1 | + | 2454 | 0.67 | 0.517976 |
Target: 5'- gUGGUUuuuGAUCGGgagcuACCGgCCCGGGg -3' miRNA: 3'- aACCGAuu-UUAGUC-----UGGUgGGGCCCg -5' |
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27407 | 5' | -54.1 | NC_005869.1 | + | 6956 | 0.68 | 0.506891 |
Target: 5'- gUGGCUGAua--AGACCACauguaCgGGGUg -3' miRNA: 3'- aACCGAUUuuagUCUGGUGg----GgCCCG- -5' |
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27407 | 5' | -54.1 | NC_005869.1 | + | 6369 | 0.68 | 0.485034 |
Target: 5'- gUUGGCgaugaacuGGUCGGGgUAggUCCCGGGCg -3' miRNA: 3'- -AACCGauu-----UUAGUCUgGU--GGGGCCCG- -5' |
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27407 | 5' | -54.1 | NC_005869.1 | + | 17284 | 0.68 | 0.485034 |
Target: 5'- -aGGCUGGg--CAG--CACCUCGGGCg -3' miRNA: 3'- aaCCGAUUuuaGUCugGUGGGGCCCG- -5' |
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27407 | 5' | -54.1 | NC_005869.1 | + | 17856 | 0.68 | 0.462581 |
Target: 5'- -cGGCgAGGggCGGGCCcgccgcuGCCgCCGGGCu -3' miRNA: 3'- aaCCGaUUUuaGUCUGG-------UGG-GGCCCG- -5' |
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27407 | 5' | -54.1 | NC_005869.1 | + | 17220 | 0.69 | 0.442745 |
Target: 5'- -cGGCagUGGGGUCuguacgggcaGGGCCACCuCCGuGGCg -3' miRNA: 3'- aaCCG--AUUUUAG----------UCUGGUGG-GGC-CCG- -5' |
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27407 | 5' | -54.1 | NC_005869.1 | + | 1432 | 0.69 | 0.422395 |
Target: 5'- aUGGCUGAc--CcGGCCGCCCUguuccaaggGGGCg -3' miRNA: 3'- aACCGAUUuuaGuCUGGUGGGG---------CCCG- -5' |
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27407 | 5' | -54.1 | NC_005869.1 | + | 33838 | 0.69 | 0.417396 |
Target: 5'- -cGGCcccgccccgcggaGGACCGCCCCaGGGCu -3' miRNA: 3'- aaCCGauuuuag------UCUGGUGGGG-CCCG- -5' |
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27407 | 5' | -54.1 | NC_005869.1 | + | 9598 | 0.69 | 0.412432 |
Target: 5'- -cGGCUGAGcUCc-GCCACCgaGGGCg -3' miRNA: 3'- aaCCGAUUUuAGucUGGUGGggCCCG- -5' |
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27407 | 5' | -54.1 | NC_005869.1 | + | 17182 | 0.7 | 0.391992 |
Target: 5'- -aGGCcgGGGGUCAGggagcucuuggccACCGCCaCGGGCg -3' miRNA: 3'- aaCCGa-UUUUAGUC-------------UGGUGGgGCCCG- -5' |
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27407 | 5' | -54.1 | NC_005869.1 | + | 16406 | 0.7 | 0.383436 |
Target: 5'- aUGGCcugacUGGGAUgaUAG-CgCACCCCGGGCa -3' miRNA: 3'- aACCG-----AUUUUA--GUCuG-GUGGGGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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