miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27407 5' -54.1 NC_005869.1 + 11437 0.65 0.6315
Target:  5'- -cGGCUGGAgcgcgugGUCAG--CACCUCGcGGCg -3'
miRNA:   3'- aaCCGAUUU-------UAGUCugGUGGGGC-CCG- -5'
27407 5' -54.1 NC_005869.1 + 3164 0.66 0.621022
Target:  5'- -cGGCagaUGAAAgugaCAGACgCGCUgCGGGCc -3'
miRNA:   3'- aaCCG---AUUUUa---GUCUG-GUGGgGCCCG- -5'
27407 5' -54.1 NC_005869.1 + 17461 0.66 0.597781
Target:  5'- -cGGCU------GGACCGCCgCgGGGCu -3'
miRNA:   3'- aaCCGAuuuuagUCUGGUGG-GgCCCG- -5'
27407 5' -54.1 NC_005869.1 + 20355 0.66 0.597781
Target:  5'- aUGGCgGAAAcggagCGGAgCACuaCCUGGGCa -3'
miRNA:   3'- aACCGaUUUUa----GUCUgGUG--GGGCCCG- -5'
27407 5' -54.1 NC_005869.1 + 2059 0.66 0.597781
Target:  5'- cUGGUUuAGAUCGccGCCGgCCCGGGg -3'
miRNA:   3'- aACCGAuUUUAGUc-UGGUgGGGCCCg -5'
27407 5' -54.1 NC_005869.1 + 20628 0.66 0.574671
Target:  5'- cUGGCcacgggCAGGCCcaucUCCUGGGCg -3'
miRNA:   3'- aACCGauuuuaGUCUGGu---GGGGCCCG- -5'
27407 5' -54.1 NC_005869.1 + 15565 0.67 0.56319
Target:  5'- gUGGCgcgccGGAggCGGAgCACCCgGcGGCg -3'
miRNA:   3'- aACCGa----UUUuaGUCUgGUGGGgC-CCG- -5'
27407 5' -54.1 NC_005869.1 + 13393 0.67 0.556331
Target:  5'- cUGGCgcacgcgcgcccagGAGAU-GGGCCugCCCGuGGCc -3'
miRNA:   3'- aACCGa-------------UUUUAgUCUGGugGGGC-CCG- -5'
27407 5' -54.1 NC_005869.1 + 16612 0.67 0.544954
Target:  5'- cUGGCUccgcgccgggCGGGCCgGCCCCaGGCc -3'
miRNA:   3'- aACCGAuuuua-----GUCUGG-UGGGGcCCG- -5'
27407 5' -54.1 NC_005869.1 + 2454 0.67 0.517976
Target:  5'- gUGGUUuuuGAUCGGgagcuACCGgCCCGGGg -3'
miRNA:   3'- aACCGAuu-UUAGUC-----UGGUgGGGCCCg -5'
27407 5' -54.1 NC_005869.1 + 6956 0.68 0.506891
Target:  5'- gUGGCUGAua--AGACCACauguaCgGGGUg -3'
miRNA:   3'- aACCGAUUuuagUCUGGUGg----GgCCCG- -5'
27407 5' -54.1 NC_005869.1 + 6369 0.68 0.485034
Target:  5'- gUUGGCgaugaacuGGUCGGGgUAggUCCCGGGCg -3'
miRNA:   3'- -AACCGauu-----UUAGUCUgGU--GGGGCCCG- -5'
27407 5' -54.1 NC_005869.1 + 17284 0.68 0.485034
Target:  5'- -aGGCUGGg--CAG--CACCUCGGGCg -3'
miRNA:   3'- aaCCGAUUuuaGUCugGUGGGGCCCG- -5'
27407 5' -54.1 NC_005869.1 + 17856 0.68 0.462581
Target:  5'- -cGGCgAGGggCGGGCCcgccgcuGCCgCCGGGCu -3'
miRNA:   3'- aaCCGaUUUuaGUCUGG-------UGG-GGCCCG- -5'
27407 5' -54.1 NC_005869.1 + 17220 0.69 0.442745
Target:  5'- -cGGCagUGGGGUCuguacgggcaGGGCCACCuCCGuGGCg -3'
miRNA:   3'- aaCCG--AUUUUAG----------UCUGGUGG-GGC-CCG- -5'
27407 5' -54.1 NC_005869.1 + 1432 0.69 0.422395
Target:  5'- aUGGCUGAc--CcGGCCGCCCUguuccaaggGGGCg -3'
miRNA:   3'- aACCGAUUuuaGuCUGGUGGGG---------CCCG- -5'
27407 5' -54.1 NC_005869.1 + 33838 0.69 0.417396
Target:  5'- -cGGCcccgccccgcggaGGACCGCCCCaGGGCu -3'
miRNA:   3'- aaCCGauuuuag------UCUGGUGGGG-CCCG- -5'
27407 5' -54.1 NC_005869.1 + 9598 0.69 0.412432
Target:  5'- -cGGCUGAGcUCc-GCCACCgaGGGCg -3'
miRNA:   3'- aaCCGAUUUuAGucUGGUGGggCCCG- -5'
27407 5' -54.1 NC_005869.1 + 17182 0.7 0.391992
Target:  5'- -aGGCcgGGGGUCAGggagcucuuggccACCGCCaCGGGCg -3'
miRNA:   3'- aaCCGa-UUUUAGUC-------------UGGUGGgGCCCG- -5'
27407 5' -54.1 NC_005869.1 + 16406 0.7 0.383436
Target:  5'- aUGGCcugacUGGGAUgaUAG-CgCACCCCGGGCa -3'
miRNA:   3'- aACCG-----AUUUUA--GUCuG-GUGGGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.