miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27408 5' -61.1 NC_005869.1 + 19314 0.66 0.316886
Target:  5'- -gGCUGGGcCGGaaGGUCAcCGgguCCUGCAu -3'
miRNA:   3'- ggUGACCC-GCC--CCGGU-GCau-GGACGU- -5'
27408 5' -61.1 NC_005869.1 + 5692 0.66 0.309203
Target:  5'- gCACgaugaGGGCGGuGGCCagcACGUAgCgGCGg -3'
miRNA:   3'- gGUGa----CCCGCC-CCGG---UGCAUgGaCGU- -5'
27408 5' -61.1 NC_005869.1 + 5476 0.66 0.309203
Target:  5'- gCCcUUGGcGCggagcuugccGGGGCCGCGgUGCCcGCAa -3'
miRNA:   3'- -GGuGACC-CG----------CCCCGGUGC-AUGGaCGU- -5'
27408 5' -61.1 NC_005869.1 + 13560 0.66 0.294265
Target:  5'- aCGUUGGGCGGGGaaaaCuuGUACUUGUc -3'
miRNA:   3'- gGUGACCCGCCCCg---GugCAUGGACGu -5'
27408 5' -61.1 NC_005869.1 + 10661 0.67 0.266088
Target:  5'- aCCGCaGcGGCucggaGGGGCUGCacUGCCUGCAc -3'
miRNA:   3'- -GGUGaC-CCG-----CCCCGGUGc-AUGGACGU- -5'
27408 5' -61.1 NC_005869.1 + 12381 0.67 0.252838
Target:  5'- cCCGCUGGggaGCGcGGG-CACGUGuccucCCUGCu -3'
miRNA:   3'- -GGUGACC---CGC-CCCgGUGCAU-----GGACGu -5'
27408 5' -61.1 NC_005869.1 + 7846 0.68 0.227971
Target:  5'- gCGCUGcaGGCGGgcucuggacGGCCACc-ACCUGCAg -3'
miRNA:   3'- gGUGAC--CCGCC---------CCGGUGcaUGGACGU- -5'
27408 5' -61.1 NC_005869.1 + 20282 0.68 0.222086
Target:  5'- uCCGCcccucGGUGGGGcCCAgGUACCgcgGCGg -3'
miRNA:   3'- -GGUGac---CCGCCCC-GGUgCAUGGa--CGU- -5'
27408 5' -61.1 NC_005869.1 + 15998 0.68 0.210704
Target:  5'- gCCGCUGGaCGGGGCggCGCGUGC--GCGc -3'
miRNA:   3'- -GGUGACCcGCCCCG--GUGCAUGgaCGU- -5'
27408 5' -61.1 NC_005869.1 + 9968 0.68 0.205204
Target:  5'- gCgGCggaaGGGUGGGGCCGCGgaggACCccaGCu -3'
miRNA:   3'- -GgUGa---CCCGCCCCGGUGCa---UGGa--CGu -5'
27408 5' -61.1 NC_005869.1 + 11231 0.69 0.194576
Target:  5'- gCCGCUGGcUGGuGGaCCugGUgaACCUGCu -3'
miRNA:   3'- -GGUGACCcGCC-CC-GGugCA--UGGACGu -5'
27408 5' -61.1 NC_005869.1 + 17471 0.69 0.189445
Target:  5'- gCCGCgGGGCuaGGGGCgGCGUGggUGCu -3'
miRNA:   3'- -GGUGaCCCG--CCCCGgUGCAUggACGu -5'
27408 5' -61.1 NC_005869.1 + 12189 0.7 0.170094
Target:  5'- aCGgUGGaGCGGGGCCAgGagagcUACCUGgGg -3'
miRNA:   3'- gGUgACC-CGCCCCGGUgC-----AUGGACgU- -5'
27408 5' -61.1 NC_005869.1 + 16675 0.71 0.132897
Target:  5'- gCGCUggagcGGGCGGcGGCCGCcGUGCCccUGCc -3'
miRNA:   3'- gGUGA-----CCCGCC-CCGGUG-CAUGG--ACGu -5'
27408 5' -61.1 NC_005869.1 + 26369 0.72 0.118896
Target:  5'- gCGCaGGaGCGGGGCCcCG-GCCUGCc -3'
miRNA:   3'- gGUGaCC-CGCCCCGGuGCaUGGACGu -5'
27408 5' -61.1 NC_005869.1 + 208 0.72 0.103326
Target:  5'- uCCGCgGGGCGGGGCCgagcgGCGgaaauuCCcGCAc -3'
miRNA:   3'- -GGUGaCCCGCCCCGG-----UGCau----GGaCGU- -5'
27408 5' -61.1 NC_005869.1 + 23876 0.74 0.079803
Target:  5'- gCCGCUccugcacGGGCGGagaGGCCGCGcGCUUGCGg -3'
miRNA:   3'- -GGUGA-------CCCGCC---CCGGUGCaUGGACGU- -5'
27408 5' -61.1 NC_005869.1 + 30759 1.1 0.000126
Target:  5'- cCCACUGGGCGGGGCCACGUACCUGCAa -3'
miRNA:   3'- -GGUGACCCGCCCCGGUGCAUGGACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.