miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27409 3' -64.9 NC_005869.1 + 26351 0.68 0.150047
Target:  5'- cCAGACCUCGccgagcuggCGCaggaGCgGggCCCCGGCc -3'
miRNA:   3'- -GUCUGGGGCa--------GCGg---CGgCa-GGGGCCG- -5'
27409 3' -64.9 NC_005869.1 + 8828 0.68 0.150047
Target:  5'- cCAGGuCCCCGUgGCCGgCGcgcUCCaCGGUg -3'
miRNA:   3'- -GUCU-GGGGCAgCGGCgGC---AGGgGCCG- -5'
27409 3' -64.9 NC_005869.1 + 24372 0.68 0.148861
Target:  5'- cCAGAguaccaUCCUG-CGCCagguccugcaggagGCCGcCCCCGGCg -3'
miRNA:   3'- -GUCU------GGGGCaGCGG--------------CGGCaGGGGCCG- -5'
27409 3' -64.9 NC_005869.1 + 23791 0.68 0.142297
Target:  5'- gCGGGCCgcgCCGUCGCCgcuGCCGUCUCUucaGCc -3'
miRNA:   3'- -GUCUGG---GGCAGCGG---CGGCAGGGGc--CG- -5'
27409 3' -64.9 NC_005869.1 + 24906 0.69 0.134555
Target:  5'- gCAGACCCUGcuggugCGCCGCgCGagcccacUCCCCGa- -3'
miRNA:   3'- -GUCUGGGGCa-----GCGGCG-GC-------AGGGGCcg -5'
27409 3' -64.9 NC_005869.1 + 27157 0.69 0.131357
Target:  5'- -cGGCCCCaggCGCCGCa--CCUCGGCc -3'
miRNA:   3'- guCUGGGGca-GCGGCGgcaGGGGCCG- -5'
27409 3' -64.9 NC_005869.1 + 16195 0.69 0.127886
Target:  5'- --cGCCCC-UCGCCGacccccgCGUCCCgCGGCc -3'
miRNA:   3'- gucUGGGGcAGCGGCg------GCAGGG-GCCG- -5'
27409 3' -64.9 NC_005869.1 + 19418 0.69 0.127886
Target:  5'- gCGGugCCCGUgGCCGg-GUCCCCGu- -3'
miRNA:   3'- -GUCugGGGCAgCGGCggCAGGGGCcg -5'
27409 3' -64.9 NC_005869.1 + 28270 0.69 0.121198
Target:  5'- gCGGcACCCCcaUCGCCGaCCGgCCCCuGCg -3'
miRNA:   3'- -GUC-UGGGGc-AGCGGC-GGCaGGGGcCG- -5'
27409 3' -64.9 NC_005869.1 + 8323 0.69 0.121198
Target:  5'- gAGGCCC--UCGCCGgaggUGUCCUCGGCg -3'
miRNA:   3'- gUCUGGGgcAGCGGCg---GCAGGGGCCG- -5'
27409 3' -64.9 NC_005869.1 + 18748 0.7 0.111773
Target:  5'- --uGCCgCCGcCGCCcCCG-CCCCGGCc -3'
miRNA:   3'- gucUGG-GGCaGCGGcGGCaGGGGCCG- -5'
27409 3' -64.9 NC_005869.1 + 18085 0.7 0.105875
Target:  5'- cCAGcACCUCGUCGCUGUCGcucaaCCCCcGCu -3'
miRNA:   3'- -GUC-UGGGGCAGCGGCGGCa----GGGGcCG- -5'
27409 3' -64.9 NC_005869.1 + 14955 0.7 0.100271
Target:  5'- aCGGACCaCGgcacgCGCCGCUGcguaacagcaUCCCCGGg -3'
miRNA:   3'- -GUCUGGgGCa----GCGGCGGC----------AGGGGCCg -5'
27409 3' -64.9 NC_005869.1 + 25514 0.71 0.082558
Target:  5'- gAGACCggCCGcCGCCGCCGaggCCgcggaggCCGGCa -3'
miRNA:   3'- gUCUGG--GGCaGCGGCGGCa--GG-------GGCCG- -5'
27409 3' -64.9 NC_005869.1 + 13098 0.72 0.07835
Target:  5'- -cGGCCCUcUCGCgCGucCCGUCCCgGGCa -3'
miRNA:   3'- guCUGGGGcAGCG-GC--GGCAGGGgCCG- -5'
27409 3' -64.9 NC_005869.1 + 22434 0.72 0.07835
Target:  5'- --cACCUCacgCGCCGCgGUCCCCGGg -3'
miRNA:   3'- gucUGGGGca-GCGGCGgCAGGGGCCg -5'
27409 3' -64.9 NC_005869.1 + 15218 0.73 0.066367
Target:  5'- gGGGCgCC--CGCCGCCuGUCCCCGGa -3'
miRNA:   3'- gUCUGgGGcaGCGGCGG-CAGGGGCCg -5'
27409 3' -64.9 NC_005869.1 + 21296 0.73 0.061058
Target:  5'- aGGGCgCCCGUgGCCGUCG-CCCCGuccuGCa -3'
miRNA:   3'- gUCUG-GGGCAgCGGCGGCaGGGGC----CG- -5'
27409 3' -64.9 NC_005869.1 + 6045 0.74 0.05311
Target:  5'- gCAGGCCUCGUCaCCGgaguccgCGUCUCCGGCg -3'
miRNA:   3'- -GUCUGGGGCAGcGGCg------GCAGGGGCCG- -5'
27409 3' -64.9 NC_005869.1 + 22316 0.75 0.046171
Target:  5'- ---cCCCCGcCGCCGCCG-CCCCaGCu -3'
miRNA:   3'- gucuGGGGCaGCGGCGGCaGGGGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.