miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27409 5' -55.6 NC_005869.1 + 10174 0.66 0.559226
Target:  5'- gUGCUGGuagcccACGAgcagguggGGCGGaGGGUagagguagagGGGCCAg -3'
miRNA:   3'- gACGACU------UGCU--------UCGCC-CUCA----------UCCGGU- -5'
27409 5' -55.6 NC_005869.1 + 26164 0.66 0.548002
Target:  5'- gCUGCUGGACGccGCGcugcaGGuGGU-GGCCGu -3'
miRNA:   3'- -GACGACUUGCuuCGC-----CC-UCAuCCGGU- -5'
27409 5' -55.6 NC_005869.1 + 10370 0.66 0.53685
Target:  5'- aUGCUcagGAGCaGAAGUGGcAGcGGGCCAu -3'
miRNA:   3'- gACGA---CUUG-CUUCGCCcUCaUCCGGU- -5'
27409 5' -55.6 NC_005869.1 + 2092 0.66 0.503901
Target:  5'- gUGgaGAGgGGAGCgGGGAGgAGGCgGg -3'
miRNA:   3'- gACgaCUUgCUUCG-CCCUCaUCCGgU- -5'
27409 5' -55.6 NC_005869.1 + 12242 0.66 0.501735
Target:  5'- gCUGgUGAGCGAGGUGccgcagacGGAGguguuccgcucgGGGCCGc -3'
miRNA:   3'- -GACgACUUGCUUCGC--------CCUCa-----------UCCGGU- -5'
27409 5' -55.6 NC_005869.1 + 12949 0.67 0.493111
Target:  5'- -aGCaGGACGAGG-GGGAGgagcGGCCc -3'
miRNA:   3'- gaCGaCUUGCUUCgCCCUCau--CCGGu -5'
27409 5' -55.6 NC_005869.1 + 9715 0.67 0.493111
Target:  5'- -gGCUGAcgAgGAAGUGaaAGUAGGCCGu -3'
miRNA:   3'- gaCGACU--UgCUUCGCccUCAUCCGGU- -5'
27409 5' -55.6 NC_005869.1 + 6923 0.67 0.481367
Target:  5'- gCUGCuUGAagAUGgcGUGGGAGUuggagcugaugguGGGCCu -3'
miRNA:   3'- -GACG-ACU--UGCuuCGCCCUCA-------------UCCGGu -5'
27409 5' -55.6 NC_005869.1 + 15921 0.67 0.45108
Target:  5'- -cGCUGAA-GAAGCGGcgcaAGGCCAa -3'
miRNA:   3'- gaCGACUUgCUUCGCCcucaUCCGGU- -5'
27409 5' -55.6 NC_005869.1 + 10925 0.68 0.421869
Target:  5'- -cGCgUGGAgGAGGCGGGGGgagugagcgcggcgcGGGCCc -3'
miRNA:   3'- gaCG-ACUUgCUUCGCCCUCa--------------UCCGGu -5'
27409 5' -55.6 NC_005869.1 + 13136 0.68 0.420882
Target:  5'- -gGCcuccagGGugGAGGCGGuGuuGUGGGCCAu -3'
miRNA:   3'- gaCGa-----CUugCUUCGCC-Cu-CAUCCGGU- -5'
27409 5' -55.6 NC_005869.1 + 2688 0.68 0.41109
Target:  5'- -gGCaGAgggacGCGGAGCGGGAGgaggagAGGCa- -3'
miRNA:   3'- gaCGaCU-----UGCUUCGCCCUCa-----UCCGgu -5'
27409 5' -55.6 NC_005869.1 + 16000 0.68 0.401441
Target:  5'- -cGCUGGACGggGCGGcGcGUGcGcGCCc -3'
miRNA:   3'- gaCGACUUGCuuCGCC-CuCAU-C-CGGu -5'
27409 5' -55.6 NC_005869.1 + 18883 0.68 0.395721
Target:  5'- uUGCUGGGCGAgacgaggauggccauGGCGGGGcu-GGCUg -3'
miRNA:   3'- gACGACUUGCU---------------UCGCCCUcauCCGGu -5'
27409 5' -55.6 NC_005869.1 + 11724 0.7 0.329641
Target:  5'- -aGCUgGGGCGGcggcGGCGGGGGUGagcgcGGCCu -3'
miRNA:   3'- gaCGA-CUUGCU----UCGCCCUCAU-----CCGGu -5'
27409 5' -55.6 NC_005869.1 + 10683 0.7 0.313238
Target:  5'- -cGCUGAcgcggccgcGCGAGGaGGGGGaGGGCCu -3'
miRNA:   3'- gaCGACU---------UGCUUCgCCCUCaUCCGGu -5'
27409 5' -55.6 NC_005869.1 + 7695 0.71 0.289805
Target:  5'- -aGCUcGGCGAGGUcuGGGuuGUGGGCCAg -3'
miRNA:   3'- gaCGAcUUGCUUCG--CCCu-CAUCCGGU- -5'
27409 5' -55.6 NC_005869.1 + 7687 0.71 0.281565
Target:  5'- gCUGCUGAGagccucuucuuCGAGcagcaucGCGGGAGUGGGUUc -3'
miRNA:   3'- -GACGACUU-----------GCUU-------CGCCCUCAUCCGGu -5'
27409 5' -55.6 NC_005869.1 + 1892 0.72 0.219815
Target:  5'- aUGCcGAgcGCGGAGCGGGAgaugcuguugcccaGUGGGUCAu -3'
miRNA:   3'- gACGaCU--UGCUUCGCCCU--------------CAUCCGGU- -5'
27409 5' -55.6 NC_005869.1 + 19212 0.73 0.215624
Target:  5'- cCUGCUGca-GGAGCuGGGAGUAcacGGCCu -3'
miRNA:   3'- -GACGACuugCUUCG-CCCUCAU---CCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.