Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 2741 | 3' | -53.6 | NC_001491.2 | + | 145373 | 0.66 | 0.971258 |
|
Target: 5'- gCCggagcGGCAgCUCUUCGGGGUgGCGg -3' miRNA: 3'- gGGagua-UCGU-GAGAGGCCCCAaUGU- -5' |
|||||||
| 2741 | 3' | -53.6 | NC_001491.2 | + | 147592 | 0.66 | 0.971258 |
|
Target: 5'- gCCgcggagUGUGGCAgUCUCCGcGGGgaACGc -3' miRNA: 3'- gGGa-----GUAUCGUgAGAGGC-CCCaaUGU- -5' |
|||||||
| 2741 | 3' | -53.6 | NC_001491.2 | + | 27609 | 0.66 | 0.968275 |
|
Target: 5'- aCCUCGUGGCGggUUuuGGGGggAg- -3' miRNA: 3'- gGGAGUAUCGUgaGAggCCCCaaUgu -5' |
|||||||
| 2741 | 3' | -53.6 | NC_001491.2 | + | 32256 | 0.67 | 0.950049 |
|
Target: 5'- gCCUCAccGCugUUgCUGGGGgugUGCAa -3' miRNA: 3'- gGGAGUauCGugAGaGGCCCCa--AUGU- -5' |
|||||||
| 2741 | 3' | -53.6 | NC_001491.2 | + | 81404 | 0.71 | 0.800324 |
|
Target: 5'- gCCC----GGCGCUCcuuccUCUGGGGUUGCAu -3' miRNA: 3'- -GGGaguaUCGUGAG-----AGGCCCCAAUGU- -5' |
|||||||
| 2741 | 3' | -53.6 | NC_001491.2 | + | 138473 | 0.71 | 0.781874 |
|
Target: 5'- gCCCUUauguaAUAGCGCUCgUCCGcGGGUUc-- -3' miRNA: 3'- -GGGAG-----UAUCGUGAG-AGGC-CCCAAugu -5' |
|||||||
| 2741 | 3' | -53.6 | NC_001491.2 | + | 138435 | 0.72 | 0.74142 |
|
Target: 5'- gCCCUCGUAGUACacCUCCGGGuagaggaacgGCAg -3' miRNA: 3'- -GGGAGUAUCGUGa-GAGGCCCcaa-------UGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home