Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2741 | 3' | -53.6 | NC_001491.2 | + | 27609 | 0.66 | 0.968275 |
Target: 5'- aCCUCGUGGCGggUUuuGGGGggAg- -3' miRNA: 3'- gGGAGUAUCGUgaGAggCCCCaaUgu -5' |
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2741 | 3' | -53.6 | NC_001491.2 | + | 32256 | 0.67 | 0.950049 |
Target: 5'- gCCUCAccGCugUUgCUGGGGgugUGCAa -3' miRNA: 3'- gGGAGUauCGugAGaGGCCCCa--AUGU- -5' |
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2741 | 3' | -53.6 | NC_001491.2 | + | 81404 | 0.71 | 0.800324 |
Target: 5'- gCCC----GGCGCUCcuuccUCUGGGGUUGCAu -3' miRNA: 3'- -GGGaguaUCGUGAG-----AGGCCCCAAUGU- -5' |
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2741 | 3' | -53.6 | NC_001491.2 | + | 138435 | 0.72 | 0.74142 |
Target: 5'- gCCCUCGUAGUACacCUCCGGGuagaggaacgGCAg -3' miRNA: 3'- -GGGAGUAUCGUGa-GAGGCCCcaa-------UGU- -5' |
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2741 | 3' | -53.6 | NC_001491.2 | + | 138473 | 0.71 | 0.781874 |
Target: 5'- gCCCUUauguaAUAGCGCUCgUCCGcGGGUUc-- -3' miRNA: 3'- -GGGAG-----UAUCGUGAG-AGGC-CCCAAugu -5' |
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2741 | 3' | -53.6 | NC_001491.2 | + | 145373 | 0.66 | 0.971258 |
Target: 5'- gCCggagcGGCAgCUCUUCGGGGUgGCGg -3' miRNA: 3'- gGGagua-UCGU-GAGAGGCCCCAaUGU- -5' |
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2741 | 3' | -53.6 | NC_001491.2 | + | 147592 | 0.66 | 0.971258 |
Target: 5'- gCCgcggagUGUGGCAgUCUCCGcGGGgaACGc -3' miRNA: 3'- gGGa-----GUAUCGUgAGAGGC-CCCaaUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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