miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27411 5' -58 NC_005869.1 + 29425 0.66 0.415865
Target:  5'- ---uUCgCCCGcGCCGCCGCCCgCGg -3'
miRNA:   3'- gauuAGgGGGUcUGGCGGUGGGaGUa -5'
27411 5' -58 NC_005869.1 + 31096 0.66 0.415865
Target:  5'- gCUGAagCUgCCCAGGCgGCCGCCCaCAa -3'
miRNA:   3'- -GAUUa-GG-GGGUCUGgCGGUGGGaGUa -5'
27411 5' -58 NC_005869.1 + 25931 0.66 0.406275
Target:  5'- --cAUCUUCCAGACCGCCcaACCUgcucCGUg -3'
miRNA:   3'- gauUAGGGGGUCUGGCGG--UGGGa---GUA- -5'
27411 5' -58 NC_005869.1 + 27159 0.66 0.396825
Target:  5'- -----gCCCCAGG-CGCCGCaCCUCGg -3'
miRNA:   3'- gauuagGGGGUCUgGCGGUG-GGAGUa -5'
27411 5' -58 NC_005869.1 + 25982 0.66 0.387518
Target:  5'- ----cCCCCCAGGguggagcccuCCGCCugCgUCAUc -3'
miRNA:   3'- gauuaGGGGGUCU----------GGCGGugGgAGUA- -5'
27411 5' -58 NC_005869.1 + 27267 0.66 0.387518
Target:  5'- -aAAUCCCCCguccuGGcCCGCCAgCCUg-- -3'
miRNA:   3'- gaUUAGGGGG-----UCuGGCGGUgGGAgua -5'
27411 5' -58 NC_005869.1 + 17584 0.67 0.360473
Target:  5'- -cGGUCCCCCGcccucGGCUGCCgaggcgGCCCaUCGUg -3'
miRNA:   3'- gaUUAGGGGGU-----CUGGCGG------UGGG-AGUA- -5'
27411 5' -58 NC_005869.1 + 16186 0.67 0.334771
Target:  5'- ----gCCCCCGGcgguACCGCCGCCUg--- -3'
miRNA:   3'- gauuaGGGGGUC----UGGCGGUGGGagua -5'
27411 5' -58 NC_005869.1 + 28167 0.67 0.326507
Target:  5'- uUAGUgCCCaacGACCGCUAcCCCUCGc -3'
miRNA:   3'- gAUUAgGGGgu-CUGGCGGU-GGGAGUa -5'
27411 5' -58 NC_005869.1 + 29201 0.68 0.317593
Target:  5'- -aAGUCCCCCAucacccuGACCGCCGagggcaucuCCCUg-- -3'
miRNA:   3'- gaUUAGGGGGU-------CUGGCGGU---------GGGAgua -5'
27411 5' -58 NC_005869.1 + 8830 0.68 0.310436
Target:  5'- -aGGUCCCCguGGCCGgCGCgCUCc- -3'
miRNA:   3'- gaUUAGGGGguCUGGCgGUGgGAGua -5'
27411 5' -58 NC_005869.1 + 23437 0.68 0.310436
Target:  5'- -gGcgUCUUCAGAcCCGCCGCCUUCAc -3'
miRNA:   3'- gaUuaGGGGGUCU-GGCGGUGGGAGUa -5'
27411 5' -58 NC_005869.1 + 13053 0.68 0.302629
Target:  5'- ----cCCCCCugccccuGACCgaggaGCCGCCCUCGc -3'
miRNA:   3'- gauuaGGGGGu------CUGG-----CGGUGGGAGUa -5'
27411 5' -58 NC_005869.1 + 24409 0.68 0.286728
Target:  5'- ----gCCCCCggcgcagccgcggAGGCCGCCgaggcGCCCUCGg -3'
miRNA:   3'- gauuaGGGGG-------------UCUGGCGG-----UGGGAGUa -5'
27411 5' -58 NC_005869.1 + 22205 0.69 0.272916
Target:  5'- -----aCCCCGGACCGCUGCC-UCAc -3'
miRNA:   3'- gauuagGGGGUCUGGCGGUGGgAGUa -5'
27411 5' -58 NC_005869.1 + 17716 0.69 0.265863
Target:  5'- cCUGAcUCCCCCAgcagcGACCGCUugCCa--- -3'
miRNA:   3'- -GAUU-AGGGGGU-----CUGGCGGugGGagua -5'
27411 5' -58 NC_005869.1 + 22315 0.69 0.258958
Target:  5'- ----aCCCCCGccGCCGCCGCCC-CAg -3'
miRNA:   3'- gauuaGGGGGUc-UGGCGGUGGGaGUa -5'
27411 5' -58 NC_005869.1 + 18504 0.7 0.239122
Target:  5'- ---cUCCUCCuccGCCGCCugCCUCGg -3'
miRNA:   3'- gauuAGGGGGuc-UGGCGGugGGAGUa -5'
27411 5' -58 NC_005869.1 + 24110 0.7 0.232798
Target:  5'- ---cUCCgCCCAcgucACCGCCACCUUCAc -3'
miRNA:   3'- gauuAGG-GGGUc---UGGCGGUGGGAGUa -5'
27411 5' -58 NC_005869.1 + 28709 0.75 0.105961
Target:  5'- -----gCCCCAGACCGCCcCCUUCAc -3'
miRNA:   3'- gauuagGGGGUCUGGCGGuGGGAGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.