Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27413 | 3' | -49.4 | NC_005869.1 | + | 7951 | 0.75 | 0.414638 |
Target: 5'- uGUGGGGGUCu-AGGUAGACGCCGUg -3' miRNA: 3'- gUACCUCUGGuuUCCAUUUGUGGCGg -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 6915 | 0.66 | 0.87458 |
Target: 5'- gGUGGAGuaAUCGAcGG-AGGCACCGgCg -3' miRNA: 3'- gUACCUC--UGGUUuCCaUUUGUGGCgG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 6790 | 0.77 | 0.304844 |
Target: 5'- --aGGAGGCCGAugaaguugGGGUAgcAGCGgCCGCCg -3' miRNA: 3'- guaCCUCUGGUU--------UCCAU--UUGU-GGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 6464 | 0.67 | 0.857208 |
Target: 5'- uGUGGAggguGACCAcguccacgGAGGUGGcuaccuCGCCGCg -3' miRNA: 3'- gUACCU----CUGGU--------UUCCAUUu-----GUGGCGg -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 4712 | 0.68 | 0.809177 |
Target: 5'- -uUGGAGACCGgcggcgaggggAAGaGUGAggGCGuuGCCc -3' miRNA: 3'- guACCUCUGGU-----------UUC-CAUU--UGUggCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 4387 | 0.67 | 0.857208 |
Target: 5'- -uUGGAG-CC-AAGGUGAGgG-CGCCa -3' miRNA: 3'- guACCUCuGGuUUCCAUUUgUgGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 3664 | 0.67 | 0.857208 |
Target: 5'- -uUGGAG-CC-AAGGUGAGgG-CGCCa -3' miRNA: 3'- guACCUCuGGuUUCCAUUUgUgGCGG- -5' |
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27413 | 3' | -49.4 | NC_005869.1 | + | 1957 | 0.68 | 0.809177 |
Target: 5'- gAUGcGGGACCAGGuGGUGcccaAGCGcCCGCg -3' miRNA: 3'- gUAC-CUCUGGUUU-CCAU----UUGU-GGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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