miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27413 3' -49.4 NC_005869.1 + 24828 0.68 0.798874
Target:  5'- --cGGuGGCCGAGGccau-CGCCGCCc -3'
miRNA:   3'- guaCCuCUGGUUUCcauuuGUGGCGG- -5'
27413 3' -49.4 NC_005869.1 + 7951 0.75 0.414638
Target:  5'- uGUGGGGGUCu-AGGUAGACGCCGUg -3'
miRNA:   3'- gUACCUCUGGuuUCCAUUUGUGGCGg -5'
27413 3' -49.4 NC_005869.1 + 24231 0.73 0.534044
Target:  5'- --aGGAGGCCu-GGGgcAugGCCGaCCg -3'
miRNA:   3'- guaCCUCUGGuuUCCauUugUGGC-GG- -5'
27413 3' -49.4 NC_005869.1 + 17179 0.8 0.206632
Target:  5'- --cGGAGGCCGGGGGUcagggagcucuuGGcCACCGCCa -3'
miRNA:   3'- guaCCUCUGGUUUCCA------------UUuGUGGCGG- -5'
27413 3' -49.4 NC_005869.1 + 16470 0.7 0.675249
Target:  5'- --gGGGGACCGccgcugcgGGcGGgcGGCGCUGCCa -3'
miRNA:   3'- guaCCUCUGGU--------UU-CCauUUGUGGCGG- -5'
27413 3' -49.4 NC_005869.1 + 22591 0.72 0.557167
Target:  5'- --gGGGGACU--AGGUGAACccggacCCGCCg -3'
miRNA:   3'- guaCCUCUGGuuUCCAUUUGu-----GGCGG- -5'
27413 3' -49.4 NC_005869.1 + 14621 0.72 0.568837
Target:  5'- --cGGGGACCc--GGccacGGGCACCGCCu -3'
miRNA:   3'- guaCCUCUGGuuuCCa---UUUGUGGCGG- -5'
27413 3' -49.4 NC_005869.1 + 11726 0.7 0.662261
Target:  5'- -cUGGGGcggcggcGgCGGGGGUGAGCGCgGCCu -3'
miRNA:   3'- guACCUC-------UgGUUUCCAUUUGUGgCGG- -5'
27413 3' -49.4 NC_005869.1 + 8467 0.73 0.522609
Target:  5'- -cUGGAGGCgGAGGGUGGcGCGgCGCUc -3'
miRNA:   3'- guACCUCUGgUUUCCAUU-UGUgGCGG- -5'
27413 3' -49.4 NC_005869.1 + 21212 0.69 0.721856
Target:  5'- cCGUGGccuGGCC--GGGcAAugACCGCCu -3'
miRNA:   3'- -GUACCu--CUGGuuUCCaUUugUGGCGG- -5'
27413 3' -49.4 NC_005869.1 + 10932 0.69 0.733284
Target:  5'- --aGGAGGCgGGGGGagUGAGCGCgGCg -3'
miRNA:   3'- guaCCUCUGgUUUCC--AUUUGUGgCGg -5'
27413 3' -49.4 NC_005869.1 + 20403 0.67 0.866035
Target:  5'- cCAUGGAGAUCAAucu----CACgGCCa -3'
miRNA:   3'- -GUACCUCUGGUUuccauuuGUGgCGG- -5'
27413 3' -49.4 NC_005869.1 + 14992 0.66 0.873739
Target:  5'- --cGGGGugCAGcGGGUAAccgucaccgacgcGCGgCGCCg -3'
miRNA:   3'- guaCCUCugGUU-UCCAUU-------------UGUgGCGG- -5'
27413 3' -49.4 NC_005869.1 + 11606 0.66 0.87458
Target:  5'- --cGGGGACCGcggcgcguGAGGU-GGCAguccCCGCUg -3'
miRNA:   3'- guaCCUCUGGU--------UUCCAuUUGU----GGCGG- -5'
27413 3' -49.4 NC_005869.1 + 11975 0.66 0.87458
Target:  5'- uGUGGAGACCuc-GGc---CAuCCGCCc -3'
miRNA:   3'- gUACCUCUGGuuuCCauuuGU-GGCGG- -5'
27413 3' -49.4 NC_005869.1 + 15061 0.67 0.838741
Target:  5'- gGUGGuGACCccGAGGGUGcuCAgCaGCCg -3'
miRNA:   3'- gUACCuCUGG--UUUCCAUuuGUgG-CGG- -5'
27413 3' -49.4 NC_005869.1 + 18890 0.66 0.87458
Target:  5'- uGUGG-GACU--GGGUGuccgcacaugcaAGCGCCGUCg -3'
miRNA:   3'- gUACCuCUGGuuUCCAU------------UUGUGGCGG- -5'
27413 3' -49.4 NC_005869.1 + 1957 0.68 0.809177
Target:  5'- gAUGcGGGACCAGGuGGUGcccaAGCGcCCGCg -3'
miRNA:   3'- gUAC-CUCUGGUUU-CCAU----UUGU-GGCGg -5'
27413 3' -49.4 NC_005869.1 + 26568 0.69 0.766804
Target:  5'- --cGGAGuaGCCAGccAGGUAgGACACCuCCg -3'
miRNA:   3'- guaCCUC--UGGUU--UCCAU-UUGUGGcGG- -5'
27413 3' -49.4 NC_005869.1 + 17801 0.69 0.765707
Target:  5'- --cGGAGACCGAGacuccgcGGUGggUuCCGCg -3'
miRNA:   3'- guaCCUCUGGUUU-------CCAUuuGuGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.