miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27414 3' -58.3 NC_005869.1 + 28111 1.09 0.000323
Target:  5'- uCCUGGACGCGGACGACGAGGACCUCUg -3'
miRNA:   3'- -GGACCUGCGCCUGCUGCUCCUGGAGA- -5'
27414 3' -58.3 NC_005869.1 + 12577 0.74 0.133428
Target:  5'- gCC-GGGCGuUGGGCGACGAGGACgaCg -3'
miRNA:   3'- -GGaCCUGC-GCCUGCUGCUCCUGgaGa -5'
27414 3' -58.3 NC_005869.1 + 9843 0.73 0.153189
Target:  5'- gCUGGAgGCGGAgGACGAGGAg---- -3'
miRNA:   3'- gGACCUgCGCCUgCUGCUCCUggaga -5'
27414 3' -58.3 NC_005869.1 + 11504 0.72 0.18531
Target:  5'- uCCgccGGGCGCuggccggggaGGGCGAgGAGGACCUg- -3'
miRNA:   3'- -GGa--CCUGCG----------CCUGCUgCUCCUGGAga -5'
27414 3' -58.3 NC_005869.1 + 17838 0.72 0.200813
Target:  5'- gCCgcgGGACGCGGGgguCGGCGAGGGgCg-- -3'
miRNA:   3'- -GGa--CCUGCGCCU---GCUGCUCCUgGaga -5'
27414 3' -58.3 NC_005869.1 + 10638 0.71 0.241408
Target:  5'- cCCUGGGCGCGGaggggGCGACGcgcucucGGucgcCCUCg -3'
miRNA:   3'- -GGACCUGCGCC-----UGCUGCu------CCu---GGAGa -5'
27414 3' -58.3 NC_005869.1 + 2994 0.7 0.274429
Target:  5'- uCCUGGugGUGGACGAgcaguccuacCGGGGucugagugugACCUgCUg -3'
miRNA:   3'- -GGACCugCGCCUGCU----------GCUCC----------UGGA-GA- -5'
27414 3' -58.3 NC_005869.1 + 23734 0.7 0.274429
Target:  5'- aCC-GGGCGCGGGgGGCGGGcccccuCCUCUu -3'
miRNA:   3'- -GGaCCUGCGCCUgCUGCUCcu----GGAGA- -5'
27414 3' -58.3 NC_005869.1 + 1699 0.69 0.281452
Target:  5'- gCCUGGuuUGCGGugGAUuugGAGGAgcaUCUCUa -3'
miRNA:   3'- -GGACCu-GCGCCugCUG---CUCCU---GGAGA- -5'
27414 3' -58.3 NC_005869.1 + 10402 0.69 0.288617
Target:  5'- cCCcGuGAgGCGGGCGcaguCGAGGGCgCUCUg -3'
miRNA:   3'- -GGaC-CUgCGCCUGCu---GCUCCUG-GAGA- -5'
27414 3' -58.3 NC_005869.1 + 11555 0.69 0.295925
Target:  5'- aCCUGGAggagGCGGAgGAgGAGGAgCUg- -3'
miRNA:   3'- -GGACCUg---CGCCUgCUgCUCCUgGAga -5'
27414 3' -58.3 NC_005869.1 + 27984 0.69 0.318708
Target:  5'- gCCgGaGACGCGGACuccgguGACGAGG-CCUg- -3'
miRNA:   3'- -GGaC-CUGCGCCUG------CUGCUCCuGGAga -5'
27414 3' -58.3 NC_005869.1 + 7907 0.68 0.327385
Target:  5'- -aUGGugGgCGGugGACGGGGcggcgguguugagcuCCUCUc -3'
miRNA:   3'- ggACCugC-GCCugCUGCUCCu--------------GGAGA- -5'
27414 3' -58.3 NC_005869.1 + 12972 0.68 0.351094
Target:  5'- cCCgGGACGCcuuugacaGCGACGAGGagggccGCCUCa -3'
miRNA:   3'- -GGaCCUGCGcc------UGCUGCUCC------UGGAGa -5'
27414 3' -58.3 NC_005869.1 + 15477 0.68 0.351094
Target:  5'- uCCUGGGCggcgGCGGGCGcuugGCG-GGACgUCc -3'
miRNA:   3'- -GGACCUG----CGCCUGC----UGCuCCUGgAGa -5'
27414 3' -58.3 NC_005869.1 + 11759 0.68 0.359548
Target:  5'- cCCUGGcgcccgaGCGGGCGACGcGGAugcaggcgcugcCCUCc -3'
miRNA:   3'- -GGACCug-----CGCCUGCUGCuCCU------------GGAGa -5'
27414 3' -58.3 NC_005869.1 + 11725 0.68 0.359548
Target:  5'- gCUGGG-GCGGcgGCGGCGGGGgugagcgcgGCCUCc -3'
miRNA:   3'- gGACCUgCGCC--UGCUGCUCC---------UGGAGa -5'
27414 3' -58.3 NC_005869.1 + 9423 0.68 0.368142
Target:  5'- gUUGG-CGCGGcaGCuGACGGGGAUCUUUu -3'
miRNA:   3'- gGACCuGCGCC--UG-CUGCUCCUGGAGA- -5'
27414 3' -58.3 NC_005869.1 + 11640 0.68 0.368142
Target:  5'- uCCUGGuugGCGCGGAaGAUGGgcuGGACgUCg -3'
miRNA:   3'- -GGACC---UGCGCCUgCUGCU---CCUGgAGa -5'
27414 3' -58.3 NC_005869.1 + 20938 0.67 0.376877
Target:  5'- cCCgGGACG-GGACGcGCGAGaGGCCg-- -3'
miRNA:   3'- -GGaCCUGCgCCUGC-UGCUC-CUGGaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.